miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22964 3' -48.2 NC_005137.2 + 93741 0.66 0.997651
Target:  5'- cAAUUA-AAGCGUugguCGCGCUgcagaaacccgcUUCGCAAu -3'
miRNA:   3'- -UUGAUuUUCGCAu---GCGCGA------------AAGCGUU- -5'
22964 3' -48.2 NC_005137.2 + 1409 0.66 0.997563
Target:  5'- uGC-AAAAGCGcgccgauuaaacACGCGCUUUUGCAu -3'
miRNA:   3'- uUGaUUUUCGCa-----------UGCGCGAAAGCGUu -5'
22964 3' -48.2 NC_005137.2 + 10889 0.66 0.996639
Target:  5'- uGCUGGAAGUGcuggccgACGCGUg--CGCGAu -3'
miRNA:   3'- uUGAUUUUCGCa------UGCGCGaaaGCGUU- -5'
22964 3' -48.2 NC_005137.2 + 100607 0.66 0.996012
Target:  5'- -cCUGAAAGacgagGUugGCGCUgaCGCAu -3'
miRNA:   3'- uuGAUUUUCg----CAugCGCGAaaGCGUu -5'
22964 3' -48.2 NC_005137.2 + 16060 0.66 0.996012
Target:  5'- aGACUGGuauauAAGCGaGCGCGUUggcUUGCAAa -3'
miRNA:   3'- -UUGAUU-----UUCGCaUGCGCGAa--AGCGUU- -5'
22964 3' -48.2 NC_005137.2 + 83034 0.67 0.995292
Target:  5'- --gUAAAGGCGgcACGCGUUUUCuGCGg -3'
miRNA:   3'- uugAUUUUCGCa-UGCGCGAAAG-CGUu -5'
22964 3' -48.2 NC_005137.2 + 107466 0.67 0.99447
Target:  5'- cAACaAAGacAGCGUGCGCGCUUUUuUAAa -3'
miRNA:   3'- -UUGaUUU--UCGCAUGCGCGAAAGcGUU- -5'
22964 3' -48.2 NC_005137.2 + 99698 0.67 0.99447
Target:  5'- -----cAAGCGaGCGCGCUgaCGCAGu -3'
miRNA:   3'- uugauuUUCGCaUGCGCGAaaGCGUU- -5'
22964 3' -48.2 NC_005137.2 + 26641 0.67 0.992478
Target:  5'- --gUAcAAGCGUGCGCGUcgcagCGCGAa -3'
miRNA:   3'- uugAUuUUCGCAUGCGCGaaa--GCGUU- -5'
22964 3' -48.2 NC_005137.2 + 99766 0.67 0.992478
Target:  5'- uGCUu--GGCGcgGCGCGCgUUUGCAAc -3'
miRNA:   3'- uUGAuuuUCGCa-UGCGCGaAAGCGUU- -5'
22964 3' -48.2 NC_005137.2 + 131098 0.68 0.989954
Target:  5'- --aUAAAAGCGcGCGCGUcgUCGUAc -3'
miRNA:   3'- uugAUUUUCGCaUGCGCGaaAGCGUu -5'
22964 3' -48.2 NC_005137.2 + 100157 0.68 0.985733
Target:  5'- cGCUGGAGuugguggcgguugguGCGUGCGCuGCUggCGCAc -3'
miRNA:   3'- uUGAUUUU---------------CGCAUGCG-CGAaaGCGUu -5'
22964 3' -48.2 NC_005137.2 + 9564 0.68 0.984979
Target:  5'- cGCUuu-GGCGgcgAUGCGgUUUCGCAGa -3'
miRNA:   3'- uUGAuuuUCGCa--UGCGCgAAAGCGUU- -5'
22964 3' -48.2 NC_005137.2 + 21970 0.69 0.980742
Target:  5'- cAACUGcAAGCG-GCGCGCUUUUcCAAa -3'
miRNA:   3'- -UUGAUuUUCGCaUGCGCGAAAGcGUU- -5'
22964 3' -48.2 NC_005137.2 + 1573 0.69 0.980274
Target:  5'- uGC-AAAAGCGcguguuuaaucgGCGCGCUUUUGCAu -3'
miRNA:   3'- uUGaUUUUCGCa-----------UGCGCGAAAGCGUu -5'
22964 3' -48.2 NC_005137.2 + 88431 0.71 0.924
Target:  5'- gAACggac-GCGUGCGCGUUUUCuGCAAa -3'
miRNA:   3'- -UUGauuuuCGCAUGCGCGAAAG-CGUU- -5'
22964 3' -48.2 NC_005137.2 + 69264 0.73 0.858911
Target:  5'- aAACUGGAcGGCGUGCGCGg--UCGCGg -3'
miRNA:   3'- -UUGAUUU-UCGCAUGCGCgaaAGCGUu -5'
22964 3' -48.2 NC_005137.2 + 18812 0.74 0.841574
Target:  5'- uGCUAGAAGCGUACGUGUUUagcugcUUGCu- -3'
miRNA:   3'- uUGAUUUUCGCAUGCGCGAA------AGCGuu -5'
22964 3' -48.2 NC_005137.2 + 44279 0.75 0.784398
Target:  5'- ---cAAGAGCGuUGCGCGCUUUCuGCAu -3'
miRNA:   3'- uugaUUUUCGC-AUGCGCGAAAG-CGUu -5'
22964 3' -48.2 NC_005137.2 + 110789 1.04 0.020586
Target:  5'- gAACUAAAAGCGUACGCGCUUUCGCAAu -3'
miRNA:   3'- -UUGAUUUUCGCAUGCGCGAAAGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.