Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22964 | 3' | -48.2 | NC_005137.2 | + | 131098 | 0.68 | 0.989954 |
Target: 5'- --aUAAAAGCGcGCGCGUcgUCGUAc -3' miRNA: 3'- uugAUUUUCGCaUGCGCGaaAGCGUu -5' |
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22964 | 3' | -48.2 | NC_005137.2 | + | 110789 | 1.04 | 0.020586 |
Target: 5'- gAACUAAAAGCGUACGCGCUUUCGCAAu -3' miRNA: 3'- -UUGAUUUUCGCAUGCGCGAAAGCGUU- -5' |
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22964 | 3' | -48.2 | NC_005137.2 | + | 107466 | 0.67 | 0.99447 |
Target: 5'- cAACaAAGacAGCGUGCGCGCUUUUuUAAa -3' miRNA: 3'- -UUGaUUU--UCGCAUGCGCGAAAGcGUU- -5' |
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22964 | 3' | -48.2 | NC_005137.2 | + | 100607 | 0.66 | 0.996012 |
Target: 5'- -cCUGAAAGacgagGUugGCGCUgaCGCAu -3' miRNA: 3'- uuGAUUUUCg----CAugCGCGAaaGCGUu -5' |
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22964 | 3' | -48.2 | NC_005137.2 | + | 100157 | 0.68 | 0.985733 |
Target: 5'- cGCUGGAGuugguggcgguugguGCGUGCGCuGCUggCGCAc -3' miRNA: 3'- uUGAUUUU---------------CGCAUGCG-CGAaaGCGUu -5' |
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22964 | 3' | -48.2 | NC_005137.2 | + | 99766 | 0.67 | 0.992478 |
Target: 5'- uGCUu--GGCGcgGCGCGCgUUUGCAAc -3' miRNA: 3'- uUGAuuuUCGCa-UGCGCGaAAGCGUU- -5' |
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22964 | 3' | -48.2 | NC_005137.2 | + | 99698 | 0.67 | 0.99447 |
Target: 5'- -----cAAGCGaGCGCGCUgaCGCAGu -3' miRNA: 3'- uugauuUUCGCaUGCGCGAaaGCGUU- -5' |
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22964 | 3' | -48.2 | NC_005137.2 | + | 93741 | 0.66 | 0.997651 |
Target: 5'- cAAUUA-AAGCGUugguCGCGCUgcagaaacccgcUUCGCAAu -3' miRNA: 3'- -UUGAUuUUCGCAu---GCGCGA------------AAGCGUU- -5' |
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22964 | 3' | -48.2 | NC_005137.2 | + | 88431 | 0.71 | 0.924 |
Target: 5'- gAACggac-GCGUGCGCGUUUUCuGCAAa -3' miRNA: 3'- -UUGauuuuCGCAUGCGCGAAAG-CGUU- -5' |
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22964 | 3' | -48.2 | NC_005137.2 | + | 83034 | 0.67 | 0.995292 |
Target: 5'- --gUAAAGGCGgcACGCGUUUUCuGCGg -3' miRNA: 3'- uugAUUUUCGCa-UGCGCGAAAG-CGUu -5' |
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22964 | 3' | -48.2 | NC_005137.2 | + | 69264 | 0.73 | 0.858911 |
Target: 5'- aAACUGGAcGGCGUGCGCGg--UCGCGg -3' miRNA: 3'- -UUGAUUU-UCGCAUGCGCgaaAGCGUu -5' |
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22964 | 3' | -48.2 | NC_005137.2 | + | 44279 | 0.75 | 0.784398 |
Target: 5'- ---cAAGAGCGuUGCGCGCUUUCuGCAu -3' miRNA: 3'- uugaUUUUCGC-AUGCGCGAAAG-CGUu -5' |
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22964 | 3' | -48.2 | NC_005137.2 | + | 26641 | 0.67 | 0.992478 |
Target: 5'- --gUAcAAGCGUGCGCGUcgcagCGCGAa -3' miRNA: 3'- uugAUuUUCGCAUGCGCGaaa--GCGUU- -5' |
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22964 | 3' | -48.2 | NC_005137.2 | + | 21970 | 0.69 | 0.980742 |
Target: 5'- cAACUGcAAGCG-GCGCGCUUUUcCAAa -3' miRNA: 3'- -UUGAUuUUCGCaUGCGCGAAAGcGUU- -5' |
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22964 | 3' | -48.2 | NC_005137.2 | + | 18812 | 0.74 | 0.841574 |
Target: 5'- uGCUAGAAGCGUACGUGUUUagcugcUUGCu- -3' miRNA: 3'- uUGAUUUUCGCAUGCGCGAA------AGCGuu -5' |
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22964 | 3' | -48.2 | NC_005137.2 | + | 16060 | 0.66 | 0.996012 |
Target: 5'- aGACUGGuauauAAGCGaGCGCGUUggcUUGCAAa -3' miRNA: 3'- -UUGAUU-----UUCGCaUGCGCGAa--AGCGUU- -5' |
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22964 | 3' | -48.2 | NC_005137.2 | + | 10889 | 0.66 | 0.996639 |
Target: 5'- uGCUGGAAGUGcuggccgACGCGUg--CGCGAu -3' miRNA: 3'- uUGAUUUUCGCa------UGCGCGaaaGCGUU- -5' |
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22964 | 3' | -48.2 | NC_005137.2 | + | 9564 | 0.68 | 0.984979 |
Target: 5'- cGCUuu-GGCGgcgAUGCGgUUUCGCAGa -3' miRNA: 3'- uUGAuuuUCGCa--UGCGCgAAAGCGUU- -5' |
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22964 | 3' | -48.2 | NC_005137.2 | + | 1573 | 0.69 | 0.980274 |
Target: 5'- uGC-AAAAGCGcguguuuaaucgGCGCGCUUUUGCAu -3' miRNA: 3'- uUGaUUUUCGCa-----------UGCGCGAAAGCGUu -5' |
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22964 | 3' | -48.2 | NC_005137.2 | + | 1409 | 0.66 | 0.997563 |
Target: 5'- uGC-AAAAGCGcgccgauuaaacACGCGCUUUUGCAu -3' miRNA: 3'- uUGaUUUUCGCa-----------UGCGCGAAAGCGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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