miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22965 3' -51.7 NC_005137.2 + 85689 0.66 0.98059
Target:  5'- aAUUUgCAUgAGCGAAGAGAaacgcaugGUGGCCg -3'
miRNA:   3'- cUAAGgGUGgUCGCUUUUCU--------CGUCGG- -5'
22965 3' -51.7 NC_005137.2 + 43793 0.66 0.978261
Target:  5'- gGGUUUgCCGacuuUCAGCGAcggcacGAGCAGCCg -3'
miRNA:   3'- -CUAAG-GGU----GGUCGCUuuu---CUCGUCGG- -5'
22965 3' -51.7 NC_005137.2 + 92813 0.66 0.978261
Target:  5'- ---aCCCACguGCGAAAAaugaGGCGGUa -3'
miRNA:   3'- cuaaGGGUGguCGCUUUUc---UCGUCGg -5'
22965 3' -51.7 NC_005137.2 + 99595 0.66 0.978261
Target:  5'- ---gCCCGCCGGUGugccuGGUGGCCu -3'
miRNA:   3'- cuaaGGGUGGUCGCuuuucUCGUCGG- -5'
22965 3' -51.7 NC_005137.2 + 57850 0.66 0.978017
Target:  5'- cAUUUUUugCAGCGcgGAGAGCAuguaccgcacacgGCCa -3'
miRNA:   3'- cUAAGGGugGUCGCuuUUCUCGU-------------CGG- -5'
22965 3' -51.7 NC_005137.2 + 130579 0.67 0.966856
Target:  5'- cGUUgCCACCAGCGAAucaacCAGCg -3'
miRNA:   3'- cUAAgGGUGGUCGCUUuucucGUCGg -5'
22965 3' -51.7 NC_005137.2 + 27396 0.68 0.927203
Target:  5'- ---gCCguCCGGCcAAAAGuAGCGGCCg -3'
miRNA:   3'- cuaaGGguGGUCGcUUUUC-UCGUCGG- -5'
22965 3' -51.7 NC_005137.2 + 125008 0.69 0.902846
Target:  5'- gGAUgCCgCACCGGCGAucGGuuGCGGCg -3'
miRNA:   3'- -CUAaGG-GUGGUCGCUuuUCu-CGUCGg -5'
22965 3' -51.7 NC_005137.2 + 48906 0.69 0.896109
Target:  5'- cGAUcgCgCCGCCuuguucGGCGAcAAGAGCGGCa -3'
miRNA:   3'- -CUAa-G-GGUGG------UCGCUuUUCUCGUCGg -5'
22965 3' -51.7 NC_005137.2 + 47290 0.7 0.889119
Target:  5'- ----aCCGCUAGCGAAuGGAGUaauuguggguuGGCCg -3'
miRNA:   3'- cuaagGGUGGUCGCUUuUCUCG-----------UCGG- -5'
22965 3' -51.7 NC_005137.2 + 112576 1.13 0.002919
Target:  5'- aGAUUCCCACCAGCGAAAAGAGCAGCCg -3'
miRNA:   3'- -CUAAGGGUGGUCGCUUUUCUCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.