Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22966 | 3' | -51.8 | NC_005137.2 | + | 72796 | 0.74 | 0.630996 |
Target: 5'- cACGCguug-GCGGCGCGcGCUGcCGUCu -3' miRNA: 3'- -UGCGauaaaCGUUGCGCaCGAC-GCAG- -5' |
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22966 | 3' | -51.8 | NC_005137.2 | + | 129994 | 0.66 | 0.978472 |
Target: 5'- uACGUUGUcucGCGGCGCG-GCUGaCGa- -3' miRNA: 3'- -UGCGAUAaa-CGUUGCGCaCGAC-GCag -5' |
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22966 | 3' | -51.8 | NC_005137.2 | + | 78796 | 0.66 | 0.973214 |
Target: 5'- uACGUgccGUUUGCGGaGCGggaGCgGCGUCg -3' miRNA: 3'- -UGCGa--UAAACGUUgCGCa--CGaCGCAG- -5' |
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22966 | 3' | -51.8 | NC_005137.2 | + | 115740 | 0.66 | 0.967084 |
Target: 5'- gACGCcaaggUGCAACGCaacGUGCgcgcgcgGCGUUu -3' miRNA: 3'- -UGCGauaa-ACGUUGCG---CACGa------CGCAG- -5' |
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22966 | 3' | -51.8 | NC_005137.2 | + | 96421 | 0.67 | 0.956128 |
Target: 5'- cGCGCg----GCGACGCGcccGCcGCGUUg -3' miRNA: 3'- -UGCGauaaaCGUUGCGCa--CGaCGCAG- -5' |
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22966 | 3' | -51.8 | NC_005137.2 | + | 7177 | 0.67 | 0.949373 |
Target: 5'- cGCGCgcgUUGCAgcgcauuucgaaccgGCGCGUGC--CGUCu -3' miRNA: 3'- -UGCGauaAACGU---------------UGCGCACGacGCAG- -5' |
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22966 | 3' | -51.8 | NC_005137.2 | + | 61832 | 0.67 | 0.947581 |
Target: 5'- aGCGCgucUUUGCcgaGCGUGuCUGCGcCa -3' miRNA: 3'- -UGCGau-AAACGuugCGCAC-GACGCaG- -5' |
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22966 | 3' | -51.8 | NC_005137.2 | + | 17315 | 0.68 | 0.927367 |
Target: 5'- cGCGCUG--UGCGACGU--GC-GCGUCg -3' miRNA: 3'- -UGCGAUaaACGUUGCGcaCGaCGCAG- -5' |
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22966 | 3' | -51.8 | NC_005137.2 | + | 33777 | 0.68 | 0.915673 |
Target: 5'- uGCGCg----GCGGCGuUGUGCUGUGcCa -3' miRNA: 3'- -UGCGauaaaCGUUGC-GCACGACGCaG- -5' |
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22966 | 3' | -51.8 | NC_005137.2 | + | 67478 | 0.69 | 0.90943 |
Target: 5'- gUGUUuaggcaGCAACGUuUGCUGCGUCa -3' miRNA: 3'- uGCGAuaaa--CGUUGCGcACGACGCAG- -5' |
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22966 | 3' | -51.8 | NC_005137.2 | + | 38652 | 0.69 | 0.889141 |
Target: 5'- gACGCUGg--GCAgGCGCGcGUUGCGg- -3' miRNA: 3'- -UGCGAUaaaCGU-UGCGCaCGACGCag -5' |
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22966 | 3' | -51.8 | NC_005137.2 | + | 88758 | 0.7 | 0.874353 |
Target: 5'- uCGUUGUaguugagagGCAACGCGUGCUcGCG-Ca -3' miRNA: 3'- uGCGAUAaa-------CGUUGCGCACGA-CGCaG- -5' |
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22966 | 3' | -51.8 | NC_005137.2 | + | 95200 | 0.7 | 0.850386 |
Target: 5'- cACGCagaUUGCAACGCGUGUcGUGa- -3' miRNA: 3'- -UGCGauaAACGUUGCGCACGaCGCag -5' |
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22966 | 3' | -51.8 | NC_005137.2 | + | 64297 | 0.71 | 0.824445 |
Target: 5'- uACGCUugcucggGUGACGCGcGCUGCGcCa -3' miRNA: 3'- -UGCGAuaaa---CGUUGCGCaCGACGCaG- -5' |
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22966 | 3' | -51.8 | NC_005137.2 | + | 11195 | 0.71 | 0.815399 |
Target: 5'- aGCGCU-UUUGCAAUGCGUucGCggucGCGUa -3' miRNA: 3'- -UGCGAuAAACGUUGCGCA--CGa---CGCAg -5' |
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22966 | 3' | -51.8 | NC_005137.2 | + | 2476 | 0.74 | 0.674028 |
Target: 5'- cGCGCUAUUuaUGCGcCGCGUGCgGCa-- -3' miRNA: 3'- -UGCGAUAA--ACGUuGCGCACGaCGcag -5' |
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22966 | 3' | -51.8 | NC_005137.2 | + | 116255 | 1.1 | 0.00427 |
Target: 5'- uACGCUAUUUGCAACGCGUGCUGCGUCa -3' miRNA: 3'- -UGCGAUAAACGUUGCGCACGACGCAG- -5' |
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22966 | 3' | -51.8 | NC_005137.2 | + | 32639 | 0.66 | 0.975948 |
Target: 5'- aAUGUUGgguuaacaaaUUGCuGGCGCGaUGCUGCGUUu -3' miRNA: 3'- -UGCGAUa---------AACG-UUGCGC-ACGACGCAG- -5' |
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22966 | 3' | -51.8 | NC_005137.2 | + | 39962 | 0.66 | 0.975948 |
Target: 5'- gGCGUUuggUUGC-ACGCGUGUUGgccgccauUGUCa -3' miRNA: 3'- -UGCGAua-AACGuUGCGCACGAC--------GCAG- -5' |
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22966 | 3' | -51.8 | NC_005137.2 | + | 26795 | 0.66 | 0.975684 |
Target: 5'- cGCGC----UGCGACGCGcacGCUuguacgaGCGUCa -3' miRNA: 3'- -UGCGauaaACGUUGCGCa--CGA-------CGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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