Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 22966 | 5' | -55.8 | NC_005137.2 | + | 28075 | 0.69 | 0.670661 |
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Target: 5'- cAGACGGCuguacacgCAGCGCgGCcUGCCGGGUGa -3' miRNA: 3'- uUCUGCCG--------GUCGUG-CGuGCGGUUUAC- -5' |
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| 22966 | 5' | -55.8 | NC_005137.2 | + | 25741 | 0.66 | 0.835955 |
|
Target: 5'- --uACGGCCAGgACGUuuGCCGAu-- -3' miRNA: 3'- uucUGCCGGUCgUGCGugCGGUUuac -5' |
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| 22966 | 5' | -55.8 | NC_005137.2 | + | 11308 | 0.67 | 0.809622 |
|
Target: 5'- cGGGCGuGgUGGCACGCGCaGCCAAc-- -3' miRNA: 3'- uUCUGC-CgGUCGUGCGUG-CGGUUuac -5' |
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| 22966 | 5' | -55.8 | NC_005137.2 | + | 11133 | 0.66 | 0.844351 |
|
Target: 5'- -cGGCGGUUAGCGCcgAUGCCGAAUu -3' miRNA: 3'- uuCUGCCGGUCGUGcgUGCGGUUUAc -5' |
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| 22966 | 5' | -55.8 | NC_005137.2 | + | 9265 | 0.75 | 0.383623 |
|
Target: 5'- uGAGACGGCUuguuGCGCGCGCGCa----- -3' miRNA: 3'- -UUCUGCCGGu---CGUGCGUGCGguuuac -5' |
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| 22966 | 5' | -55.8 | NC_005137.2 | + | 7177 | 0.67 | 0.827363 |
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Target: 5'- -cGACgaGGCCGugacGCGCGUGCGCCAc--- -3' miRNA: 3'- uuCUG--CCGGU----CGUGCGUGCGGUuuac -5' |
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| 22966 | 5' | -55.8 | NC_005137.2 | + | 1681 | 0.67 | 0.781753 |
|
Target: 5'- --cGCGGUCAGCaACGCGCGCa----- -3' miRNA: 3'- uucUGCCGGUCG-UGCGUGCGguuuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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