miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22968 3' -56.1 NC_005137.2 + 122772 0.66 0.892314
Target:  5'- cACGCgcAGUaacgAUGUGCCACGCaUCCGcGg -3'
miRNA:   3'- -UGCGacUCG----UGCACGGUGUGaAGGC-C- -5'
22968 3' -56.1 NC_005137.2 + 28528 0.66 0.871133
Target:  5'- aGCGUUGAGCACGUGUUuaGCAUgcuaaUCGa -3'
miRNA:   3'- -UGCGACUCGUGCACGG--UGUGaa---GGCc -5'
22968 3' -56.1 NC_005137.2 + 91080 0.66 0.863632
Target:  5'- cUGCUGAGCGCcuUGCCcaauugaaaACUUCCGu -3'
miRNA:   3'- uGCGACUCGUGc-ACGGug-------UGAAGGCc -5'
22968 3' -56.1 NC_005137.2 + 45608 0.67 0.831577
Target:  5'- aACGCgu-GCGCGUGCUGCGCcgcCCGc -3'
miRNA:   3'- -UGCGacuCGUGCACGGUGUGaa-GGCc -5'
22968 3' -56.1 NC_005137.2 + 93833 0.67 0.823086
Target:  5'- gGCGCUGGGCcuguuGCGcauCUACGCggCCGGc -3'
miRNA:   3'- -UGCGACUCG-----UGCac-GGUGUGaaGGCC- -5'
22968 3' -56.1 NC_005137.2 + 118208 0.67 0.823086
Target:  5'- uCGCUGcGGCGCG-GCCACAaa--CGGu -3'
miRNA:   3'- uGCGAC-UCGUGCaCGGUGUgaagGCC- -5'
22968 3' -56.1 NC_005137.2 + 11150 0.67 0.814418
Target:  5'- uUGUUGGcuGCGCGUGCCAcCACgcCCGa -3'
miRNA:   3'- uGCGACU--CGUGCACGGU-GUGaaGGCc -5'
22968 3' -56.1 NC_005137.2 + 57838 0.67 0.814418
Target:  5'- cGCGgaGAGCAUGUaCCGCACa--CGGc -3'
miRNA:   3'- -UGCgaCUCGUGCAcGGUGUGaagGCC- -5'
22968 3' -56.1 NC_005137.2 + 39652 0.68 0.79659
Target:  5'- uUGCUGccaGGCuaaGCGgcGCCGCACUuUCCGGu -3'
miRNA:   3'- uGCGAC---UCG---UGCa-CGGUGUGA-AGGCC- -5'
22968 3' -56.1 NC_005137.2 + 61499 0.68 0.778159
Target:  5'- gACGCaGAGCGCGUGCCAgaagaGCUugUCUc- -3'
miRNA:   3'- -UGCGaCUCGUGCACGGUg----UGA--AGGcc -5'
22968 3' -56.1 NC_005137.2 + 114101 0.7 0.689741
Target:  5'- uCGCcGAGCgccGCGUGCgucugCAcCGCUUCCGGa -3'
miRNA:   3'- uGCGaCUCG---UGCACG-----GU-GUGAAGGCC- -5'
22968 3' -56.1 NC_005137.2 + 107175 0.7 0.669321
Target:  5'- -aGCUGAGCgACGUGCUugA--UCUGGu -3'
miRNA:   3'- ugCGACUCG-UGCACGGugUgaAGGCC- -5'
22968 3' -56.1 NC_005137.2 + 96575 0.7 0.648778
Target:  5'- aACGCggcGGGCGCGUcGCCGCGCggguagcggUCGGc -3'
miRNA:   3'- -UGCGa--CUCGUGCA-CGGUGUGaa-------GGCC- -5'
22968 3' -56.1 NC_005137.2 + 130777 0.71 0.607596
Target:  5'- uUGCUGGcuuugucggcGCGCGUGuCCGCGCUUUCGu -3'
miRNA:   3'- uGCGACU----------CGUGCAC-GGUGUGAAGGCc -5'
22968 3' -56.1 NC_005137.2 + 31468 0.72 0.556583
Target:  5'- cGCGUUGucuuGUGCGcGgCACGCUUCCGGu -3'
miRNA:   3'- -UGCGACu---CGUGCaCgGUGUGAAGGCC- -5'
22968 3' -56.1 NC_005137.2 + 8574 0.73 0.516678
Target:  5'- cACGgUGGGCucguCGUGCCGUACUUCCa- -3'
miRNA:   3'- -UGCgACUCGu---GCACGGUGUGAAGGcc -5'
22968 3' -56.1 NC_005137.2 + 2588 0.73 0.47797
Target:  5'- gGCGC-GGGCACGUcgGCCaccgcgugACACUUCUGGc -3'
miRNA:   3'- -UGCGaCUCGUGCA--CGG--------UGUGAAGGCC- -5'
22968 3' -56.1 NC_005137.2 + 119582 1.1 0.001973
Target:  5'- cACGCUGAGCACGUGCCACACUUCCGGa -3'
miRNA:   3'- -UGCGACUCGUGCACGGUGUGAAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.