miRNA display CGI


Results 41 - 60 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22969 3' -52.8 NC_005137.2 + 22315 0.67 0.930222
Target:  5'- cGCGCgGCuuGCACGGUUUucacguGCACGaauUugGCg -3'
miRNA:   3'- -CGCG-CG--UGUGUCGAAu-----CGUGC---AugCG- -5'
22969 3' -52.8 NC_005137.2 + 97297 0.67 0.930222
Target:  5'- aGCGaauuuGCaauaaaauGCACuGCUUGGCGCuUGCGCu -3'
miRNA:   3'- -CGCg----CG--------UGUGuCGAAUCGUGcAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 10217 0.67 0.945083
Target:  5'- cCG-GCGCugGGCUgucacaAGCugGUguACGCg -3'
miRNA:   3'- cGCgCGUGugUCGAa-----UCGugCA--UGCG- -5'
22969 3' -52.8 NC_005137.2 + 38350 0.67 0.948664
Target:  5'- aGCGCGUugACAGUggcguugaccGCACcaaauaUGCGCa -3'
miRNA:   3'- -CGCGCGugUGUCGaau-------CGUGc-----AUGCG- -5'
22969 3' -52.8 NC_005137.2 + 108171 0.67 0.9491
Target:  5'- uGCGCGCGCcCGcccucgcGUUUGGCAac-GCGCa -3'
miRNA:   3'- -CGCGCGUGuGU-------CGAAUCGUgcaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 77629 0.67 0.952917
Target:  5'- aUGCGUACAUGGCUggcuuguguugaAGCACGcacACGUg -3'
miRNA:   3'- cGCGCGUGUGUCGAa-----------UCGUGCa--UGCG- -5'
22969 3' -52.8 NC_005137.2 + 123069 0.67 0.953329
Target:  5'- cGCG-GCGCGCAGCcUUGGUgagguCGUugacugggcaaauGCGCa -3'
miRNA:   3'- -CGCgCGUGUGUCG-AAUCGu----GCA-------------UGCG- -5'
22969 3' -52.8 NC_005137.2 + 26537 0.67 0.953329
Target:  5'- gGCGCGCGUACGGCaaguuugUUAGCgguaGCG-ACGUu -3'
miRNA:   3'- -CGCGCGUGUGUCG-------AAUCG----UGCaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 61990 0.67 0.930222
Target:  5'- -gGCGCAgACAcGCUcGGCAaagACGCg -3'
miRNA:   3'- cgCGCGUgUGU-CGAaUCGUgcaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 99692 0.67 0.934919
Target:  5'- aGCGCGCugACGCAGUUaaaCGCGgaaaacuUGCGCg -3'
miRNA:   3'- -CGCGCG--UGUGUCGAaucGUGC-------AUGCG- -5'
22969 3' -52.8 NC_005137.2 + 35054 0.67 0.935428
Target:  5'- cCGCGCA-ACAGCUgacuGUaaACGUACGg -3'
miRNA:   3'- cGCGCGUgUGUCGAau--CG--UGCAUGCg -5'
22969 3' -52.8 NC_005137.2 + 93789 0.67 0.953739
Target:  5'- uCGuCGCACAaacauGCgugAGCACGUACa- -3'
miRNA:   3'- cGC-GCGUGUgu---CGaa-UCGUGCAUGcg -5'
22969 3' -52.8 NC_005137.2 + 97393 0.67 0.953739
Target:  5'- uUGUGgACAaacCGGCUgagAGCAUGcUGCGCg -3'
miRNA:   3'- cGCGCgUGU---GUCGAa--UCGUGC-AUGCG- -5'
22969 3' -52.8 NC_005137.2 + 43968 0.67 0.945083
Target:  5'- cGgGCGCGgGCGGCUgcucguGC-CGU-CGCu -3'
miRNA:   3'- -CgCGCGUgUGUCGAau----CGuGCAuGCG- -5'
22969 3' -52.8 NC_005137.2 + 110703 0.67 0.945083
Target:  5'- cGgGCGCACAuCGGCg-GGCACcuccaACGCc -3'
miRNA:   3'- -CgCGCGUGU-GUCGaaUCGUGca---UGCG- -5'
22969 3' -52.8 NC_005137.2 + 129682 0.67 0.945083
Target:  5'- uGCGCGC-CACAauGCUcgccAGCACGUuuCGa -3'
miRNA:   3'- -CGCGCGuGUGU--CGAa---UCGUGCAu-GCg -5'
22969 3' -52.8 NC_005137.2 + 98307 0.67 0.940382
Target:  5'- cCGCGCGC-CGGCUauaaaaGGCGCGgcCGa -3'
miRNA:   3'- cGCGCGUGuGUCGAa-----UCGUGCauGCg -5'
22969 3' -52.8 NC_005137.2 + 21131 0.67 0.940382
Target:  5'- uGCGUGCaaGCGCGGCaaaacGCGCGc-CGCa -3'
miRNA:   3'- -CGCGCG--UGUGUCGaau--CGUGCauGCG- -5'
22969 3' -52.8 NC_005137.2 + 45254 0.67 0.935428
Target:  5'- cGCGCGCcCGCgaguGGCagAGCAaGUcGCGCg -3'
miRNA:   3'- -CGCGCGuGUG----UCGaaUCGUgCA-UGCG- -5'
22969 3' -52.8 NC_005137.2 + 32713 0.67 0.940382
Target:  5'- -aGCGCAaGCAGCcgcguGCACGgcCGUa -3'
miRNA:   3'- cgCGCGUgUGUCGaau--CGUGCauGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.