miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22971 3' -52.4 NC_005137.2 + 61340 0.66 0.943128
Target:  5'- gACAAGCucuucUGGCaCGCGCUcuGcGUCAAa -3'
miRNA:   3'- -UGUUCGc----ACCG-GCGCGAuuUuCAGUU- -5'
22971 3' -52.4 NC_005137.2 + 35172 0.67 0.932999
Target:  5'- -aAGGUGUGGUCGUGCcGGgcGUCAu -3'
miRNA:   3'- ugUUCGCACCGGCGCGaUUuuCAGUu -5'
22971 3' -52.4 NC_005137.2 + 60960 0.67 0.915801
Target:  5'- uGCAAGUGUugaGGCUGCGCUuuAA-UCAAu -3'
miRNA:   3'- -UGUUCGCA---CCGGCGCGAuuUUcAGUU- -5'
22971 3' -52.4 NC_005137.2 + 130763 0.68 0.909534
Target:  5'- gGCGcGCGUGuCCGCGCUuuc-GUCAAa -3'
miRNA:   3'- -UGUuCGCACcGGCGCGAuuuuCAGUU- -5'
22971 3' -52.4 NC_005137.2 + 111781 0.68 0.903004
Target:  5'- ----aCGUGGCgGCGCUcGAAGUUAAc -3'
miRNA:   3'- uguucGCACCGgCGCGAuUUUCAGUU- -5'
22971 3' -52.4 NC_005137.2 + 99347 0.68 0.889162
Target:  5'- uACAAGCGgcacgugGGCgGCaacGUUGAGGGUCAc -3'
miRNA:   3'- -UGUUCGCa------CCGgCG---CGAUUUUCAGUu -5'
22971 3' -52.4 NC_005137.2 + 91894 0.68 0.889162
Target:  5'- uACAAGa-UGGCCGCGUUAGAuuuuGUUAu -3'
miRNA:   3'- -UGUUCgcACCGGCGCGAUUUu---CAGUu -5'
22971 3' -52.4 NC_005137.2 + 125117 0.68 0.881859
Target:  5'- uCAAGCGgcgGGCCGCGCcgcucGAAcGUCu- -3'
miRNA:   3'- uGUUCGCa--CCGGCGCGa----UUUuCAGuu -5'
22971 3' -52.4 NC_005137.2 + 20630 0.7 0.833051
Target:  5'- cAUggGCGUGGUgGCGCUcguugAAGAGUa-- -3'
miRNA:   3'- -UGuuCGCACCGgCGCGA-----UUUUCAguu -5'
22971 3' -52.4 NC_005137.2 + 12002 0.7 0.824153
Target:  5'- gGCAGGCGUGGCUuCGUcGAAGGcCAc -3'
miRNA:   3'- -UGUUCGCACCGGcGCGaUUUUCaGUu -5'
22971 3' -52.4 NC_005137.2 + 10792 0.7 0.80578
Target:  5'- -gGAGUGUGGagCGCGCUaaGAAGGUUAAu -3'
miRNA:   3'- ugUUCGCACCg-GCGCGA--UUUUCAGUU- -5'
22971 3' -52.4 NC_005137.2 + 27884 0.72 0.705028
Target:  5'- gGCGAucGCGUGGCgGCGCcAcgGGUCAu -3'
miRNA:   3'- -UGUU--CGCACCGgCGCGaUuuUCAGUu -5'
22971 3' -52.4 NC_005137.2 + 43964 0.74 0.608089
Target:  5'- cGCGGGCGgcugcucGuGCCGuCGCUGAAAGUCGg -3'
miRNA:   3'- -UGUUCGCa------C-CGGC-GCGAUUUUCAGUu -5'
22971 3' -52.4 NC_005137.2 + 122526 0.75 0.522969
Target:  5'- gGCGGGCGUGGgCGUGCUAuuGGcCGGa -3'
miRNA:   3'- -UGUUCGCACCgGCGCGAUuuUCaGUU- -5'
22971 3' -52.4 NC_005137.2 + 122333 1.06 0.006264
Target:  5'- cACAAGCGUGGCCGCGCUAAAAGUCAAa -3'
miRNA:   3'- -UGUUCGCACCGGCGCGAUUUUCAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.