miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22971 5' -59.2 NC_005137.2 + 51851 0.67 0.670708
Target:  5'- gUCUuGuCCAuguGCACGCCUuuuACGCCCg -3'
miRNA:   3'- gAGGcC-GGUuauCGUGCGGG---UGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 7468 0.67 0.670708
Target:  5'- uUgUGGUgCAAUAGC-CGCCCACcgcaagcuuguGCCCg -3'
miRNA:   3'- gAgGCCG-GUUAUCGuGCGGGUG-----------CGGG- -5'
22971 5' -59.2 NC_005137.2 + 116294 0.67 0.66065
Target:  5'- --aCGGCCAGcacGCACGCCaaAUGUCCg -3'
miRNA:   3'- gagGCCGGUUau-CGUGCGGg-UGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 99405 0.67 0.66065
Target:  5'- -aCUGuGCCcGUGGCAacgggGCgCGCGCCCa -3'
miRNA:   3'- gaGGC-CGGuUAUCGUg----CGgGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 108141 0.68 0.654605
Target:  5'- -cCCGGUCGucgggcggcggcggcGUcGGUAUGCgCGCGCCCg -3'
miRNA:   3'- gaGGCCGGU---------------UA-UCGUGCGgGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 88636 0.68 0.65057
Target:  5'- uUCCGuCCAAUuGCGCGacggugaaCCGCGCCa -3'
miRNA:   3'- gAGGCcGGUUAuCGUGCg-------GGUGCGGg -5'
22971 5' -59.2 NC_005137.2 + 106016 0.68 0.65057
Target:  5'- aUUCGGCCAAcucGCACGCCUcCGUg- -3'
miRNA:   3'- gAGGCCGGUUau-CGUGCGGGuGCGgg -5'
22971 5' -59.2 NC_005137.2 + 14136 0.68 0.65057
Target:  5'- gUCgGGCCAAUAGCGCacuauuaaaucGCaCACGUCg -3'
miRNA:   3'- gAGgCCGGUUAUCGUG-----------CGgGUGCGGg -5'
22971 5' -59.2 NC_005137.2 + 13869 0.68 0.65057
Target:  5'- -gUCGGCaaaaAAUAGCaacaACGCggUCGCGCCCa -3'
miRNA:   3'- gaGGCCGg---UUAUCG----UGCG--GGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 29496 0.68 0.630375
Target:  5'- -aUUGGCCAAaauugcuuuUGGCGCGCUuCACGCUa -3'
miRNA:   3'- gaGGCCGGUU---------AUCGUGCGG-GUGCGGg -5'
22971 5' -59.2 NC_005137.2 + 48389 0.68 0.620276
Target:  5'- -aUCGGCgCAAUuGUAaaaGCCCuCGCCCa -3'
miRNA:   3'- gaGGCCG-GUUAuCGUg--CGGGuGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 42367 0.68 0.610185
Target:  5'- -gCCGuuGCCAcucguuGUAGCGCGCgUCGCGUCCc -3'
miRNA:   3'- gaGGC--CGGU------UAUCGUGCG-GGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 103087 0.68 0.610185
Target:  5'- uUUCGGCUuGUAuGC-CGCCCAUGUUCa -3'
miRNA:   3'- gAGGCCGGuUAU-CGuGCGGGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 93628 0.69 0.580037
Target:  5'- uUUCGGCaaacggcgcUGGCGCGCaCCGUGCCCg -3'
miRNA:   3'- gAGGCCGguu------AUCGUGCG-GGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 104892 0.69 0.570052
Target:  5'- -aCCcGUCGAUAGCugGgCCCAgGCCa -3'
miRNA:   3'- gaGGcCGGUUAUCGugC-GGGUgCGGg -5'
22971 5' -59.2 NC_005137.2 + 95528 0.69 0.570052
Target:  5'- uUUCGGCa---AGCA-GCCaCACGCCCg -3'
miRNA:   3'- gAGGCCGguuaUCGUgCGG-GUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 44655 0.69 0.570052
Target:  5'- --aCGGCCGAUGGCAagcuCGaCCCgACGCUa -3'
miRNA:   3'- gagGCCGGUUAUCGU----GC-GGG-UGCGGg -5'
22971 5' -59.2 NC_005137.2 + 2439 0.69 0.540375
Target:  5'- --gUGGCCGA---CGUGCCCGCGCCCg -3'
miRNA:   3'- gagGCCGGUUaucGUGCGGGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 28210 0.7 0.520881
Target:  5'- gUCUGGCgCAucccAGCGCGCgUCGCGCCa -3'
miRNA:   3'- gAGGCCG-GUua--UCGUGCG-GGUGCGGg -5'
22971 5' -59.2 NC_005137.2 + 41332 0.7 0.495964
Target:  5'- uUCCGuuGUCA--GGCACGCCUaccacaccgccgucuGCGCCCa -3'
miRNA:   3'- gAGGC--CGGUuaUCGUGCGGG---------------UGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.