miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22972 3' -57.7 NC_005137.2 + 20634 0.66 0.828516
Target:  5'- gGCGUGGugGCGCuCGuuGA-AGAGUa -3'
miRNA:   3'- -CGCGCCugUGCGcGCggCUgUUUCGg -5'
22972 3' -57.7 NC_005137.2 + 42670 0.66 0.828516
Target:  5'- cGgGCGGGCGagcgauuaGCGCGCU-AUAccGCCg -3'
miRNA:   3'- -CgCGCCUGUg-------CGCGCGGcUGUuuCGG- -5'
22972 3' -57.7 NC_005137.2 + 72519 0.66 0.828516
Target:  5'- uGCGCGuGuACACuaGCGUGCaCG-CGGAGCg -3'
miRNA:   3'- -CGCGC-C-UGUG--CGCGCG-GCuGUUUCGg -5'
22972 3' -57.7 NC_005137.2 + 78893 0.66 0.827685
Target:  5'- gGCGCccGGGCAgacCGCGCacuuaucGCCGA---AGCCg -3'
miRNA:   3'- -CGCG--CCUGU---GCGCG-------CGGCUguuUCGG- -5'
22972 3' -57.7 NC_005137.2 + 102420 0.66 0.8235
Target:  5'- uUGCGGucgcgUACGCGuCGCCuGGCAcaccggucauugacuGGGCCg -3'
miRNA:   3'- cGCGCCu----GUGCGC-GCGG-CUGU---------------UUCGG- -5'
22972 3' -57.7 NC_005137.2 + 12149 0.66 0.820122
Target:  5'- aCGaaGcCACGCcUGCCGAUAAAGCUa -3'
miRNA:   3'- cGCgcCuGUGCGcGCGGCUGUUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 98193 0.66 0.820122
Target:  5'- gGCGCugcuGGACccgcuCGCaGCGcCCGACGugcacgcuGGCCa -3'
miRNA:   3'- -CGCG----CCUGu----GCG-CGC-GGCUGUu-------UCGG- -5'
22972 3' -57.7 NC_005137.2 + 96356 0.66 0.820122
Target:  5'- uCGUGG-UGCGUGCuuacGCCGcgACGGGGCCa -3'
miRNA:   3'- cGCGCCuGUGCGCG----CGGC--UGUUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 88041 0.66 0.820122
Target:  5'- -gGCGGGCcaccACGUGgGaCGGCGuGGCCa -3'
miRNA:   3'- cgCGCCUG----UGCGCgCgGCUGUuUCGG- -5'
22972 3' -57.7 NC_005137.2 + 121946 0.66 0.820122
Target:  5'- -aGCGGugGCGguaGCGCa-ACAAGuGCCg -3'
miRNA:   3'- cgCGCCugUGCg--CGCGgcUGUUU-CGG- -5'
22972 3' -57.7 NC_005137.2 + 58645 0.66 0.820122
Target:  5'- aGCuGUGGcuggaagcuaACGcCGCGCaauuagccGCCGACAAAGCg -3'
miRNA:   3'- -CG-CGCC----------UGU-GCGCG--------CGGCUGUUUCGg -5'
22972 3' -57.7 NC_005137.2 + 46877 0.66 0.820122
Target:  5'- -gGUGGugGCGCGCGUgGAaacgguGUCg -3'
miRNA:   3'- cgCGCCugUGCGCGCGgCUguuu--CGG- -5'
22972 3' -57.7 NC_005137.2 + 7183 0.66 0.815005
Target:  5'- uUGCGGcgacgaggccgugacGCGCGUGCGCC-ACGuuguGCCc -3'
miRNA:   3'- cGCGCC---------------UGUGCGCGCGGcUGUuu--CGG- -5'
22972 3' -57.7 NC_005137.2 + 130854 0.66 0.811561
Target:  5'- cGCGuUGGACGCGCagcccGCGCCuGAauuguacGCCg -3'
miRNA:   3'- -CGC-GCCUGUGCG-----CGCGG-CUguuu---CGG- -5'
22972 3' -57.7 NC_005137.2 + 113044 0.66 0.811561
Target:  5'- aGCGuCGGGUACGCGCaGCCcGCGu-GCUa -3'
miRNA:   3'- -CGC-GCCUGUGCGCG-CGGcUGUuuCGG- -5'
22972 3' -57.7 NC_005137.2 + 110302 0.66 0.811561
Target:  5'- uGCaGCGGuGCACGCagcuuaCGCCGAaaaAAcAGCCa -3'
miRNA:   3'- -CG-CGCC-UGUGCGc-----GCGGCUg--UU-UCGG- -5'
22972 3' -57.7 NC_005137.2 + 108729 0.66 0.808092
Target:  5'- aGCacaCGGGCGCGC-CGCCGAUcacguacauuuGCCg -3'
miRNA:   3'- -CGc--GCCUGUGCGcGCGGCUGuuu--------CGG- -5'
22972 3' -57.7 NC_005137.2 + 118559 0.67 0.802841
Target:  5'- cCGUGGACAUGaaaGCGCCuGaucacggacugcGCAuuGCCa -3'
miRNA:   3'- cGCGCCUGUGCg--CGCGG-C------------UGUuuCGG- -5'
22972 3' -57.7 NC_005137.2 + 1509 0.67 0.802841
Target:  5'- cGCGCGGcGC-CGaCGCGuuGuuCAAuucGGCCa -3'
miRNA:   3'- -CGCGCC-UGuGC-GCGCggCu-GUU---UCGG- -5'
22972 3' -57.7 NC_005137.2 + 87357 0.67 0.802841
Target:  5'- -gGCGGACAuUGCGCaggaCGugAucGCCa -3'
miRNA:   3'- cgCGCCUGU-GCGCGcg--GCugUuuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.