Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22972 | 5' | -52.2 | NC_005137.2 | + | 2591 | 0.66 | 0.974058 |
Target: 5'- uCGGGCgCGGGCACGuCGGC-CACcgcgUGa -3' miRNA: 3'- -GCUCGaGUUUGUGC-GCCGuGUGa---ACa -5' |
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22972 | 5' | -52.2 | NC_005137.2 | + | 5255 | 0.71 | 0.793131 |
Target: 5'- --cGCUCgAAACGCGCGGCGCAa---- -3' miRNA: 3'- gcuCGAG-UUUGUGCGCCGUGUgaaca -5' |
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22972 | 5' | -52.2 | NC_005137.2 | + | 6997 | 0.67 | 0.953531 |
Target: 5'- aCGAGCggucgcCGGGCacaACGUGGCGCACg--- -3' miRNA: 3'- -GCUCGa-----GUUUG---UGCGCCGUGUGaaca -5' |
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22972 | 5' | -52.2 | NC_005137.2 | + | 18644 | 0.66 | 0.974058 |
Target: 5'- uGGGCUUAAACuugACGuCGGCACAg---- -3' miRNA: 3'- gCUCGAGUUUG---UGC-GCCGUGUgaaca -5' |
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22972 | 5' | -52.2 | NC_005137.2 | + | 26802 | 0.66 | 0.9767 |
Target: 5'- uCGuGUUCGcGCuGCGaCGcGCACGCUUGUa -3' miRNA: 3'- -GCuCGAGUuUG-UGC-GC-CGUGUGAACA- -5' |
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22972 | 5' | -52.2 | NC_005137.2 | + | 33147 | 0.68 | 0.918356 |
Target: 5'- -uGGUcugCAAACAUGUGcGCGCACUUGg -3' miRNA: 3'- gcUCGa--GUUUGUGCGC-CGUGUGAACa -5' |
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22972 | 5' | -52.2 | NC_005137.2 | + | 33814 | 0.69 | 0.899413 |
Target: 5'- gGAGCUUAAugGCgGCGGCaacgACGCUa-- -3' miRNA: 3'- gCUCGAGUUugUG-CGCCG----UGUGAaca -5' |
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22972 | 5' | -52.2 | NC_005137.2 | + | 37605 | 0.73 | 0.681936 |
Target: 5'- uCGAGCgCAAAUACGUGGUGCGCg--- -3' miRNA: 3'- -GCUCGaGUUUGUGCGCCGUGUGaaca -5' |
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22972 | 5' | -52.2 | NC_005137.2 | + | 39759 | 0.66 | 0.971206 |
Target: 5'- aCGAcGUccgUCAuauuccccGGCACGUGGCACACUg-- -3' miRNA: 3'- -GCU-CG---AGU--------UUGUGCGCCGUGUGAaca -5' |
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22972 | 5' | -52.2 | NC_005137.2 | + | 41977 | 0.71 | 0.811698 |
Target: 5'- aGcGCUaaCAAACGCGUGGCGCGCcgUGa -3' miRNA: 3'- gCuCGA--GUUUGUGCGCCGUGUGa-ACa -5' |
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22972 | 5' | -52.2 | NC_005137.2 | + | 48703 | 0.68 | 0.924155 |
Target: 5'- aCGAGCUCGAguauAUugGCGGUAacaACUcGg -3' miRNA: 3'- -GCUCGAGUU----UGugCGCCGUg--UGAaCa -5' |
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22972 | 5' | -52.2 | NC_005137.2 | + | 63912 | 0.66 | 0.968134 |
Target: 5'- gCGAuGCUUGGcggacgguucGCACGCGGUGCGCgaaUGUc -3' miRNA: 3'- -GCU-CGAGUU----------UGUGCGCCGUGUGa--ACA- -5' |
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22972 | 5' | -52.2 | NC_005137.2 | + | 68404 | 0.68 | 0.934976 |
Target: 5'- cCGAGCacaUCGAcuugUACGUGGCGCACggGUu -3' miRNA: 3'- -GCUCG---AGUUu---GUGCGCCGUGUGaaCA- -5' |
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22972 | 5' | -52.2 | NC_005137.2 | + | 88891 | 0.66 | 0.966184 |
Target: 5'- aCGAGCUgcgucccaucaacugCGAACugcCGCuGGCACACUUu- -3' miRNA: 3'- -GCUCGA---------------GUUUGu--GCG-CCGUGUGAAca -5' |
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22972 | 5' | -52.2 | NC_005137.2 | + | 96297 | 0.66 | 0.971206 |
Target: 5'- gCGuGCauUCGccGACACGcCGGCGCGCaagUGUg -3' miRNA: 3'- -GCuCG--AGU--UUGUGC-GCCGUGUGa--ACA- -5' |
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22972 | 5' | -52.2 | NC_005137.2 | + | 97479 | 0.67 | 0.960942 |
Target: 5'- uGAcGCUCGcGCAgGUGGCACguguaauACUUGg -3' miRNA: 3'- gCU-CGAGUuUGUgCGCCGUG-------UGAACa -5' |
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22972 | 5' | -52.2 | NC_005137.2 | + | 100026 | 0.66 | 0.974058 |
Target: 5'- gGuGCgCAAGCACGCGGUccgACGCg--- -3' miRNA: 3'- gCuCGaGUUUGUGCGCCG---UGUGaaca -5' |
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22972 | 5' | -52.2 | NC_005137.2 | + | 104163 | 0.67 | 0.949272 |
Target: 5'- aGAGCUCAuguacgagaacGACAUGCuGCGCAugaacCUUGa -3' miRNA: 3'- gCUCGAGU-----------UUGUGCGcCGUGU-----GAACa -5' |
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22972 | 5' | -52.2 | NC_005137.2 | + | 110477 | 0.76 | 0.554688 |
Target: 5'- cCGGGCUCAAACACGC-GCACAa---- -3' miRNA: 3'- -GCUCGAGUUUGUGCGcCGUGUgaaca -5' |
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22972 | 5' | -52.2 | NC_005137.2 | + | 122498 | 0.75 | 0.618119 |
Target: 5'- gGGGCUUAuuuGACuuuuaGCGCGGCcACGCUUGUg -3' miRNA: 3'- gCUCGAGU---UUG-----UGCGCCG-UGUGAACA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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