miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22973 5' -54.1 NC_005137.2 + 71363 0.66 0.940186
Target:  5'- ----cGUCGGCcGcGUugacuguCGGCGACGCGg -3'
miRNA:   3'- aaaaaCGGCCGuC-CAu------GCUGCUGCGC- -5'
22973 5' -54.1 NC_005137.2 + 34863 0.66 0.940186
Target:  5'- ----cGCaCGGCGGGcaACG-CGAUGCGc -3'
miRNA:   3'- aaaaaCG-GCCGUCCa-UGCuGCUGCGC- -5'
22973 5' -54.1 NC_005137.2 + 78804 0.66 0.935245
Target:  5'- -gUUUGCgGaGCGGGaGCGGCGuCGuCGg -3'
miRNA:   3'- aaAAACGgC-CGUCCaUGCUGCuGC-GC- -5'
22973 5' -54.1 NC_005137.2 + 10881 0.66 0.935245
Target:  5'- ---gUGCUGGCcgacGcGUGCG-CGAUGCGg -3'
miRNA:   3'- aaaaACGGCCGu---C-CAUGCuGCUGCGC- -5'
22973 5' -54.1 NC_005137.2 + 130780 0.66 0.935245
Target:  5'- cUUUUGCUGGCuuuGU-CGGCG-CGCGu -3'
miRNA:   3'- aAAAACGGCCGuc-CAuGCUGCuGCGC- -5'
22973 5' -54.1 NC_005137.2 + 42641 0.66 0.918909
Target:  5'- -cUUUGuuGGUGGGUACaugGACuacuuuGGCGCGa -3'
miRNA:   3'- aaAAACggCCGUCCAUG---CUG------CUGCGC- -5'
22973 5' -54.1 NC_005137.2 + 7308 0.66 0.918909
Target:  5'- -cUUUGCCcgGGCAGGaUGCGGucaaagugcUGGCGCc -3'
miRNA:   3'- aaAAACGG--CCGUCC-AUGCU---------GCUGCGc -5'
22973 5' -54.1 NC_005137.2 + 115237 0.67 0.912959
Target:  5'- gUUUUGgUGGgAGGUcgacgaacacAUGGCGACGCu -3'
miRNA:   3'- aAAAACgGCCgUCCA----------UGCUGCUGCGc -5'
22973 5' -54.1 NC_005137.2 + 110965 0.67 0.90676
Target:  5'- ----cGUCGGCGGGcgGCGuCGAuUGCGa -3'
miRNA:   3'- aaaaaCGGCCGUCCa-UGCuGCU-GCGC- -5'
22973 5' -54.1 NC_005137.2 + 45104 0.67 0.90676
Target:  5'- ---cUGCCacucGCGGGcGCG-CGACGCGu -3'
miRNA:   3'- aaaaACGGc---CGUCCaUGCuGCUGCGC- -5'
22973 5' -54.1 NC_005137.2 + 125017 0.67 0.893619
Target:  5'- -----aCCGGCGaucGGuUGCGGCGugGCGc -3'
miRNA:   3'- aaaaacGGCCGU---CC-AUGCUGCugCGC- -5'
22973 5' -54.1 NC_005137.2 + 116456 0.67 0.886684
Target:  5'- ---gUGCCGGCAGaaGCGAaGGCGUu -3'
miRNA:   3'- aaaaACGGCCGUCcaUGCUgCUGCGc -5'
22973 5' -54.1 NC_005137.2 + 50767 0.68 0.872107
Target:  5'- ---gUGCCGGCGuGUAUGAguACGCGu -3'
miRNA:   3'- aaaaACGGCCGUcCAUGCUgcUGCGC- -5'
22973 5' -54.1 NC_005137.2 + 4599 0.68 0.848556
Target:  5'- ----cGaCGGCgcgaAGGUGCG-CGACGCGg -3'
miRNA:   3'- aaaaaCgGCCG----UCCAUGCuGCUGCGC- -5'
22973 5' -54.1 NC_005137.2 + 17829 0.68 0.840281
Target:  5'- gUUUUGgUGGCAGGUAuuguUGGCGuCGUGu -3'
miRNA:   3'- aAAAACgGCCGUCCAU----GCUGCuGCGC- -5'
22973 5' -54.1 NC_005137.2 + 103810 0.69 0.823141
Target:  5'- --gUUGCUGGU--GUGCGGCGGCGgGu -3'
miRNA:   3'- aaaAACGGCCGucCAUGCUGCUGCgC- -5'
22973 5' -54.1 NC_005137.2 + 97391 0.69 0.822264
Target:  5'- --gUUGCCGcgcaaauaaguuuGCAGGUugGGCacguacaccgGGCGCGg -3'
miRNA:   3'- aaaAACGGC-------------CGUCCAugCUG----------CUGCGC- -5'
22973 5' -54.1 NC_005137.2 + 123056 0.69 0.814292
Target:  5'- ----cGCCGGUcgAGGUcGCGGCG-CGCa -3'
miRNA:   3'- aaaaaCGGCCG--UCCA-UGCUGCuGCGc -5'
22973 5' -54.1 NC_005137.2 + 107143 0.71 0.697195
Target:  5'- ----cGgCGGCGGGUugGGUGACGCc -3'
miRNA:   3'- aaaaaCgGCCGUCCAugCUGCUGCGc -5'
22973 5' -54.1 NC_005137.2 + 72144 0.75 0.50042
Target:  5'- ---cUGCCGGCAcGUccaACGACGugGCa -3'
miRNA:   3'- aaaaACGGCCGUcCA---UGCUGCugCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.