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miRNA: 3'- aaaaaCG-GCCGUCCa-UGCuGCUGCGC- -5'
miRNA: 3'- aaaaaCGGCCGuC-CAu------GCUGCUGCGC- -5'
miRNA: 3'- aAAAACGGCCGuc-CAuGCUGCuGCGC- -5'
miRNA: 3'- aaaaACGGCCGu---C-CAUGCuGCUGCGC- -5'
Results 21 - 24 of 24 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio#
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P value |
| Predicted miRNA align pattern | |||||||
| 22973 | 5' | -54.1 | NC_005137.2 | + | 34863 | 0.66 | 0.940186 |
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Target: 5'- ----cGCaCGGCGGGcaACG-CGAUGCGc -3' miRNA: 3'- aaaaaCG-GCCGUCCa-UGCuGCUGCGC- -5' |
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| 22973 | 5' | -54.1 | NC_005137.2 | + | 71363 | 0.66 | 0.940186 |
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Target: 5'- ----cGUCGGCcGcGUugacuguCGGCGACGCGg -3' miRNA: 3'- aaaaaCGGCCGuC-CAu------GCUGCUGCGC- -5' |
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| 22973 | 5' | -54.1 | NC_005137.2 | + | 130780 | 0.66 | 0.935245 |
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Target: 5'- cUUUUGCUGGCuuuGU-CGGCG-CGCGu -3' miRNA: 3'- aAAAACGGCCGuc-CAuGCUGCuGCGC- -5' |
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| 22973 | 5' | -54.1 | NC_005137.2 | + | 10881 | 0.66 | 0.935245 |
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Target: 5'- ---gUGCUGGCcgacGcGUGCG-CGAUGCGg -3' miRNA: 3'- aaaaACGGCCGu---C-CAUGCuGCUGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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