miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22983 3' -48.1 NC_005147.1 + 20359 0.66 0.911461
Target:  5'- --aGCAuACACUCUUAUuuUAUCACUgACg -3'
miRNA:   3'- ucaCGUuUGUGAGAAUG--AUGGUGG-UG- -5'
22983 3' -48.1 NC_005147.1 + 6835 0.66 0.896494
Target:  5'- -aUGCAAGCAcCUCUaGCaACCAuacuCCACu -3'
miRNA:   3'- ucACGUUUGU-GAGAaUGaUGGU----GGUG- -5'
22983 3' -48.1 NC_005147.1 + 4182 0.69 0.781511
Target:  5'- -cUGCAAuaGCUUUUGCaacACCACCACc -3'
miRNA:   3'- ucACGUUugUGAGAAUGa--UGGUGGUG- -5'
22983 3' -48.1 NC_005147.1 + 26515 0.73 0.50697
Target:  5'- cAGUGgAuACACUUUgGCUGCCACCu- -3'
miRNA:   3'- -UCACgUuUGUGAGAaUGAUGGUGGug -5'
22983 3' -48.1 NC_005147.1 + 20449 1.11 0.001763
Target:  5'- cAGUGCAAACACUCUUACUACCACCACu -3'
miRNA:   3'- -UCACGUUUGUGAGAAUGAUGGUGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.