miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
230 3' -51.3 AC_000008.1 + 15809 0.66 0.83021
Target:  5'- gCCCUGGG-CAUAGU-CUc---GCCGCg -3'
miRNA:   3'- -GGGACUCaGUAUCGuGAuuacCGGCG- -5'
230 3' -51.3 AC_000008.1 + 1067 0.66 0.820546
Target:  5'- uUCUUuuGUCAUGGUucCUGgcggggaaGUGGCCGCg -3'
miRNA:   3'- -GGGAcuCAGUAUCGu-GAU--------UACCGGCG- -5'
230 3' -51.3 AC_000008.1 + 5325 0.66 0.796469
Target:  5'- gUCUGGGUCAcggugaagggguGCGCUccgGGCUGCg -3'
miRNA:   3'- gGGACUCAGUau----------CGUGAuuaCCGGCG- -5'
230 3' -51.3 AC_000008.1 + 10532 0.66 0.789229
Target:  5'- uCCUUGAGguugCAcuccuccaAGCACUGcugccaaacgcccAUGGCCGUc -3'
miRNA:   3'- -GGGACUCa---GUa-------UCGUGAU-------------UACCGGCG- -5'
230 3' -51.3 AC_000008.1 + 25416 0.67 0.779789
Target:  5'- gCCU---UCAacgAGCGCUccGUGGCCGCg -3'
miRNA:   3'- gGGAcucAGUa--UCGUGAu-UACCGGCG- -5'
230 3' -51.3 AC_000008.1 + 19783 0.67 0.779789
Target:  5'- gUCUGAauggccgcGUCcacuGUGGaCACUGGUGGCgGCg -3'
miRNA:   3'- gGGACU--------CAG----UAUC-GUGAUUACCGgCG- -5'
230 3' -51.3 AC_000008.1 + 5380 0.68 0.725081
Target:  5'- cUCUUGAuUCAU-GCGCUGuugcucGGCCGCu -3'
miRNA:   3'- -GGGACUcAGUAuCGUGAUua----CCGGCG- -5'
230 3' -51.3 AC_000008.1 + 15987 0.68 0.702373
Target:  5'- gCCCUGGGgcgc-GCACaaacgcGGCCGCa -3'
miRNA:   3'- -GGGACUCaguauCGUGauua--CCGGCG- -5'
230 3' -51.3 AC_000008.1 + 7990 0.72 0.442537
Target:  5'- aCCgGAGUCGcgggcaaAGCACUuGUGGCgGCg -3'
miRNA:   3'- gGGaCUCAGUa------UCGUGAuUACCGgCG- -5'
230 3' -51.3 AC_000008.1 + 19527 1.16 0.000496
Target:  5'- aCCCUGAGUCAUAGCACUAAUGGCCGCg -3'
miRNA:   3'- -GGGACUCAGUAUCGUGAUUACCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.