miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23022 3' -51.6 NC_005178.1 + 1331 0.66 0.808949
Target:  5'- cGGACGCUgccgcuucGGGUUgUCCUcgucaauccagcguUCgGGCCAGa -3'
miRNA:   3'- cCCUGCGA--------CCUAAaAGGA--------------AG-UCGGUC- -5'
23022 3' -51.6 NC_005178.1 + 2077 1.12 0.000847
Target:  5'- gGGGACGCUGGAUUUUCCUUCAGCCAGg -3'
miRNA:   3'- -CCCUGCGACCUAAAAGGAAGUCGGUC- -5'
23022 3' -51.6 NC_005178.1 + 2898 0.68 0.7133
Target:  5'- -uGAUGCUGGAcauggcgcgCC-UCGGCCAGg -3'
miRNA:   3'- ccCUGCGACCUaaaa-----GGaAGUCGGUC- -5'
23022 3' -51.6 NC_005178.1 + 5370 0.67 0.726818
Target:  5'- -aGGCGCUGGAgg-----UCGGCCAGu -3'
miRNA:   3'- ccCUGCGACCUaaaaggaAGUCGGUC- -5'
23022 3' -51.6 NC_005178.1 + 6479 0.67 0.770652
Target:  5'- cGGA-GCUGGugag-CCagUUCGGCCAGg -3'
miRNA:   3'- cCCUgCGACCuaaaaGG--AAGUCGGUC- -5'
23022 3' -51.6 NC_005178.1 + 15586 0.71 0.531478
Target:  5'- cGGGugGUUGGcgaacUCUUUGGCCAGa -3'
miRNA:   3'- -CCCugCGACCuaaaaGGAAGUCGGUC- -5'
23022 3' -51.6 NC_005178.1 + 16984 0.66 0.808949
Target:  5'- aGGGCGCUgucguccauauccgGGAaug-CC-UCGGCCAGg -3'
miRNA:   3'- cCCUGCGA--------------CCUaaaaGGaAGUCGGUC- -5'
23022 3' -51.6 NC_005178.1 + 17809 0.67 0.749
Target:  5'- cGGGGCGaaauUGGAUcUUCCgacCGGCCc- -3'
miRNA:   3'- -CCCUGCg---ACCUAaAAGGaa-GUCGGuc -5'
23022 3' -51.6 NC_005178.1 + 23320 0.67 0.749
Target:  5'- gGGGACGCccGAaacgUCCUgaaGGCCGGg -3'
miRNA:   3'- -CCCUGCGacCUaaa-AGGAag-UCGGUC- -5'
23022 3' -51.6 NC_005178.1 + 33859 0.76 0.254509
Target:  5'- uGGGACGCUGGAUg-UCCUguUCGGugaagaggaCCAGg -3'
miRNA:   3'- -CCCUGCGACCUAaaAGGA--AGUC---------GGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.