miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23023 3' -59.6 NC_005178.1 + 23349 0.66 0.39161
Target:  5'- -cGAGAUcGGCacCGGGGCGUCGCaCCa-- -3'
miRNA:   3'- ucUUCUA-CCG--GCCCUGCGGCG-GGaac -5'
23023 3' -59.6 NC_005178.1 + 21085 0.66 0.39161
Target:  5'- cAGGuAGGUcaGGCCGGuGGCggugcuGCCGCCCa-- -3'
miRNA:   3'- -UCU-UCUA--CCGGCC-CUG------CGGCGGGaac -5'
23023 3' -59.6 NC_005178.1 + 20706 0.66 0.365017
Target:  5'- uGAAGAgcuaccugGGCCaGGccaagcccauCGCCGCCCUg- -3'
miRNA:   3'- uCUUCUa-------CCGGcCCu---------GCGGCGGGAac -5'
23023 3' -59.6 NC_005178.1 + 24506 0.66 0.356435
Target:  5'- cGAcGAUGaCCGGcGCGCCGCCUUc- -3'
miRNA:   3'- uCUuCUACcGGCCcUGCGGCGGGAac -5'
23023 3' -59.6 NC_005178.1 + 25363 0.66 0.347995
Target:  5'- -cAGGcUGGCCGGGA-GCUGUCCg-- -3'
miRNA:   3'- ucUUCuACCGGCCCUgCGGCGGGaac -5'
23023 3' -59.6 NC_005178.1 + 4936 0.67 0.339699
Target:  5'- cGAGGAacUGGCCGccaGCgGCCGCCCg-- -3'
miRNA:   3'- uCUUCU--ACCGGCcc-UG-CGGCGGGaac -5'
23023 3' -59.6 NC_005178.1 + 23335 0.67 0.339699
Target:  5'- -aAGGGUGGCCagaucgGGGACGCCcgaaacGUCCUg- -3'
miRNA:   3'- ucUUCUACCGG------CCCUGCGG------CGGGAac -5'
23023 3' -59.6 NC_005178.1 + 28631 0.67 0.315678
Target:  5'- cGggGAauGCCGGcGACGCC-CCCggUGg -3'
miRNA:   3'- uCuuCUacCGGCC-CUGCGGcGGGa-AC- -5'
23023 3' -59.6 NC_005178.1 + 32210 0.67 0.307961
Target:  5'- cGAGcguuUGGCCaucGACGCCGCCCUg- -3'
miRNA:   3'- uCUUcu--ACCGGcc-CUGCGGCGGGAac -5'
23023 3' -59.6 NC_005178.1 + 31400 0.68 0.285679
Target:  5'- -----uUGGCUGGGGCGCgCGCgUUUGg -3'
miRNA:   3'- ucuucuACCGGCCCUGCG-GCGgGAAC- -5'
23023 3' -59.6 NC_005178.1 + 5978 0.68 0.264687
Target:  5'- cGGAGucguuCCGGGGCGCUGCCCc-- -3'
miRNA:   3'- uCUUCuacc-GGCCCUGCGGCGGGaac -5'
23023 3' -59.6 NC_005178.1 + 23078 0.7 0.20368
Target:  5'- -cAGGAUcGCgGGGugGUCGUCCUUGa -3'
miRNA:   3'- ucUUCUAcCGgCCCugCGGCGGGAAC- -5'
23023 3' -59.6 NC_005178.1 + 6058 0.7 0.193045
Target:  5'- uGAAGAcgGuGCCgagGGGugGCCGCCCc-- -3'
miRNA:   3'- uCUUCUa-C-CGG---CCCugCGGCGGGaac -5'
23023 3' -59.6 NC_005178.1 + 10704 0.73 0.120834
Target:  5'- cGGAGAcgccGGCCGGGGCGUugCGCCCc-- -3'
miRNA:   3'- uCUUCUa---CCGGCCCUGCG--GCGGGaac -5'
23023 3' -59.6 NC_005178.1 + 3567 1.08 0.000258
Target:  5'- uAGAAGAUGGCCGGGACGCCGCCCUUGa -3'
miRNA:   3'- -UCUUCUACCGGCCCUGCGGCGGGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.