miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23023 5' -56 NC_005178.1 + 11370 0.66 0.567378
Target:  5'- -gUugGUAGaGCc-CGGCCACCACCu -3'
miRNA:   3'- caGugCAUCcCGuaGCUGGUGGUGGu -5'
23023 5' -56 NC_005178.1 + 37527 0.66 0.556282
Target:  5'- --uGCGggAGGGCAUCGGCaagcugACCGCUc -3'
miRNA:   3'- cagUGCa-UCCCGUAGCUGg-----UGGUGGu -5'
23023 5' -56 NC_005178.1 + 19972 0.66 0.54525
Target:  5'- -gCAC-UGGcGGCAUCGAuCCGCCAgcCCGg -3'
miRNA:   3'- caGUGcAUC-CCGUAGCU-GGUGGU--GGU- -5'
23023 5' -56 NC_005178.1 + 12492 0.67 0.51692
Target:  5'- aUUGCGgc-GGCAUCGggguugucaucagucACCGCCACCGg -3'
miRNA:   3'- cAGUGCaucCCGUAGC---------------UGGUGGUGGU- -5'
23023 5' -56 NC_005178.1 + 31566 0.67 0.50191
Target:  5'- aGUCGuCGaGGucaaGGCAgUGACCGCCGCCGg -3'
miRNA:   3'- -CAGU-GCaUC----CCGUaGCUGGUGGUGGU- -5'
23023 5' -56 NC_005178.1 + 34643 0.67 0.491307
Target:  5'- --aGCGcuauaAGGGCGuguUCGACCGCCGCg- -3'
miRNA:   3'- cagUGCa----UCCCGU---AGCUGGUGGUGgu -5'
23023 5' -56 NC_005178.1 + 5250 0.67 0.480808
Target:  5'- cGUCGCGguuaaccuGGaGCAguuggccgaGGCCGCCACCGu -3'
miRNA:   3'- -CAGUGCau------CC-CGUag-------CUGGUGGUGGU- -5'
23023 5' -56 NC_005178.1 + 12099 0.67 0.479764
Target:  5'- gGUCGCGUGgcGGGCcuggccgAUgGGCgCGCCGCCu -3'
miRNA:   3'- -CAGUGCAU--CCCG-------UAgCUG-GUGGUGGu -5'
23023 5' -56 NC_005178.1 + 21007 0.67 0.47042
Target:  5'- uUCGcCGU-GGGCGgcaGcACCGCCACCGg -3'
miRNA:   3'- cAGU-GCAuCCCGUag-C-UGGUGGUGGU- -5'
23023 5' -56 NC_005178.1 + 15423 0.67 0.47042
Target:  5'- -aCugGUAGGagacGCAaCGAUgGCCGCCAu -3'
miRNA:   3'- caGugCAUCC----CGUaGCUGgUGGUGGU- -5'
23023 5' -56 NC_005178.1 + 30856 0.67 0.47042
Target:  5'- -cCAgGUcGaGGCcgCGACCGCUGCCAg -3'
miRNA:   3'- caGUgCAuC-CCGuaGCUGGUGGUGGU- -5'
23023 5' -56 NC_005178.1 + 30417 0.68 0.460147
Target:  5'- --gACGUGGGGCugAUCGACgCGagCGCCAa -3'
miRNA:   3'- cagUGCAUCCCG--UAGCUG-GUg-GUGGU- -5'
23023 5' -56 NC_005178.1 + 31052 0.68 0.439966
Target:  5'- uGUCugGccaGGCGUCG-CCGCCGCUg -3'
miRNA:   3'- -CAGugCaucCCGUAGCuGGUGGUGGu -5'
23023 5' -56 NC_005178.1 + 15818 0.68 0.430066
Target:  5'- -gCAUGgacGGCGUCGGCCACgGCUAu -3'
miRNA:   3'- caGUGCaucCCGUAGCUGGUGgUGGU- -5'
23023 5' -56 NC_005178.1 + 24959 0.68 0.410667
Target:  5'- gGUCugGUgggcagccaaccAGGGUuuuuUCGuCCGCCGCCu -3'
miRNA:   3'- -CAGugCA------------UCCCGu---AGCuGGUGGUGGu -5'
23023 5' -56 NC_005178.1 + 36281 0.69 0.39182
Target:  5'- cGUCGCuc-GGcGCGUCGGCCAucCCGCCu -3'
miRNA:   3'- -CAGUGcauCC-CGUAGCUGGU--GGUGGu -5'
23023 5' -56 NC_005178.1 + 32324 0.71 0.29113
Target:  5'- cGUCACcgauagcgAGGGCGUCGcaACUGCCGCCc -3'
miRNA:   3'- -CAGUGca------UCCCGUAGC--UGGUGGUGGu -5'
23023 5' -56 NC_005178.1 + 28941 0.71 0.28372
Target:  5'- -cCGCGUccGGCA-CGGCCAUCGCCGu -3'
miRNA:   3'- caGUGCAucCCGUaGCUGGUGGUGGU- -5'
23023 5' -56 NC_005178.1 + 3533 1.09 0.000514
Target:  5'- cGUCACGUAGGGCAUCGACCACCACCAg -3'
miRNA:   3'- -CAGUGCAUCCCGUAGCUGGUGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.