miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23024 3' -50.3 NC_005178.1 + 32075 0.66 0.86821
Target:  5'- aGGUCGUcGgcgugGgUCGGCAcccauagcggcuUCUGCUGg -3'
miRNA:   3'- -CCAGCAaCa----UgAGCCGUu-----------AGACGACa -5'
23024 3' -50.3 NC_005178.1 + 27545 0.67 0.794138
Target:  5'- uGUUGUuccUGgcCUCGGCGAUCUuCUGg -3'
miRNA:   3'- cCAGCA---ACauGAGCCGUUAGAcGACa -5'
23024 3' -50.3 NC_005178.1 + 25654 0.67 0.833943
Target:  5'- -cUCGU--UGCUCGGCugcaaCUGCUGUu -3'
miRNA:   3'- ccAGCAacAUGAGCCGuua--GACGACA- -5'
23024 3' -50.3 NC_005178.1 + 22701 0.81 0.170455
Target:  5'- cGGagCGUUGUGCUCGGCGuUCUGCg-- -3'
miRNA:   3'- -CCa-GCAACAUGAGCCGUuAGACGaca -5'
23024 3' -50.3 NC_005178.1 + 20813 0.66 0.861313
Target:  5'- --cCGagGUACgccCGGCGcUCUGCUGUu -3'
miRNA:   3'- ccaGCaaCAUGa--GCCGUuAGACGACA- -5'
23024 3' -50.3 NC_005178.1 + 5808 0.66 0.886246
Target:  5'- cGGUCGUgcccgagGCcgccaccgaugCGGCGAUCUGCUc- -3'
miRNA:   3'- -CCAGCAaca----UGa----------GCCGUUAGACGAca -5'
23024 3' -50.3 NC_005178.1 + 3923 0.66 0.87822
Target:  5'- gGGUCaacgaUGCgCGGCAAgCUGCUGUg -3'
miRNA:   3'- -CCAGcaac-AUGaGCCGUUaGACGACA- -5'
23024 3' -50.3 NC_005178.1 + 3890 1.1 0.001671
Target:  5'- cGGUCGUUGUACUCGGCAAUCUGCUGUu -3'
miRNA:   3'- -CCAGCAACAUGAGCCGUUAGACGACA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.