miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23024 5' -44.9 NC_005178.1 + 34298 0.66 0.995374
Target:  5'- uCGGCGcuGAGGUUuaCCCGaaccgucagacgGGACAgaUCAGCa -3'
miRNA:   3'- -GCUGUu-UUCUAA--GGGU------------UCUGU--AGUCG- -5'
23024 5' -44.9 NC_005178.1 + 16200 0.66 0.99449
Target:  5'- gGGCGGGuacUUCCCGAGccGgAUCGGCa -3'
miRNA:   3'- gCUGUUUucuAAGGGUUC--UgUAGUCG- -5'
23024 5' -44.9 NC_005178.1 + 30762 0.66 0.993473
Target:  5'- uCGACGccuuGGAgcugaaCCAGGACAUCcGCc -3'
miRNA:   3'- -GCUGUuu--UCUaag---GGUUCUGUAGuCG- -5'
23024 5' -44.9 NC_005178.1 + 23343 0.66 0.993473
Target:  5'- gGGCGAcGAGAUcggCaCCGGGGCGUC-GCa -3'
miRNA:   3'- gCUGUU-UUCUAa--G-GGUUCUGUAGuCG- -5'
23024 5' -44.9 NC_005178.1 + 20990 0.66 0.993364
Target:  5'- uGGCGAAcgcuaccGGGUUCgCCGuGGGCggCAGCa -3'
miRNA:   3'- gCUGUUU-------UCUAAG-GGU-UCUGuaGUCG- -5'
23024 5' -44.9 NC_005178.1 + 21400 0.66 0.992312
Target:  5'- uGGCAGAAGAUcgccauggaagUgCCGAGcaACAcCAGCa -3'
miRNA:   3'- gCUGUUUUCUA-----------AgGGUUC--UGUaGUCG- -5'
23024 5' -44.9 NC_005178.1 + 34938 0.67 0.9895
Target:  5'- gCGGCGcacaguGAUcgCCCGAGGCGUCcggucgGGCg -3'
miRNA:   3'- -GCUGUuuu---CUAa-GGGUUCUGUAG------UCG- -5'
23024 5' -44.9 NC_005178.1 + 17177 0.67 0.9895
Target:  5'- aGGCGucacgccuGGAUgugCuCCAGGACAUCcGCg -3'
miRNA:   3'- gCUGUuu------UCUAa--G-GGUUCUGUAGuCG- -5'
23024 5' -44.9 NC_005178.1 + 23516 0.67 0.9895
Target:  5'- cCGGCu--GGGUUCCugauCAGGGCGUCAcuccGCu -3'
miRNA:   3'- -GCUGuuuUCUAAGG----GUUCUGUAGU----CG- -5'
23024 5' -44.9 NC_005178.1 + 22801 0.67 0.985943
Target:  5'- gCGGCuccuGGUgUUCCAGGACGUCgauGGCg -3'
miRNA:   3'- -GCUGuuuuCUA-AGGGUUCUGUAG---UCG- -5'
23024 5' -44.9 NC_005178.1 + 9502 0.67 0.985943
Target:  5'- aUGACGAAcGAa--CCAAGACAgaccgcCAGCg -3'
miRNA:   3'- -GCUGUUUuCUaagGGUUCUGUa-----GUCG- -5'
23024 5' -44.9 NC_005178.1 + 31957 0.68 0.981529
Target:  5'- cCGGCAGcgccaUCCCGGcGACGUCGGUc -3'
miRNA:   3'- -GCUGUUuucuaAGGGUU-CUGUAGUCG- -5'
23024 5' -44.9 NC_005178.1 + 32969 0.68 0.977308
Target:  5'- cCGGCGAccacgccgcugGAGAUcaCCCAGccgcugaugcucugcGGCGUCAGCg -3'
miRNA:   3'- -GCUGUU-----------UUCUAa-GGGUU---------------CUGUAGUCG- -5'
23024 5' -44.9 NC_005178.1 + 11220 0.69 0.966053
Target:  5'- gGACc-AGGAagCCCAGGGCggCGGCc -3'
miRNA:   3'- gCUGuuUUCUaaGGGUUCUGuaGUCG- -5'
23024 5' -44.9 NC_005178.1 + 16912 0.71 0.925444
Target:  5'- uGGCcGAGGcAUUCCCGgauauGGACGaCAGCg -3'
miRNA:   3'- gCUGuUUUC-UAAGGGU-----UCUGUaGUCG- -5'
23024 5' -44.9 NC_005178.1 + 37515 0.73 0.845081
Target:  5'- uCGGCc---GAUUCCUgcgggAGGGCAUCGGCa -3'
miRNA:   3'- -GCUGuuuuCUAAGGG-----UUCUGUAGUCG- -5'
23024 5' -44.9 NC_005178.1 + 29353 0.74 0.80479
Target:  5'- cCGACGuuAGcgaccggCaCCGGGGCAUCAGCa -3'
miRNA:   3'- -GCUGUuuUCuaa----G-GGUUCUGUAGUCG- -5'
23024 5' -44.9 NC_005178.1 + 12183 0.74 0.783264
Target:  5'- gCGGCAcaacuGAAGAcggUCCAGGACAcCAGCg -3'
miRNA:   3'- -GCUGU-----UUUCUaa-GGGUUCUGUaGUCG- -5'
23024 5' -44.9 NC_005178.1 + 27437 0.75 0.734541
Target:  5'- gCGACAAAAGuuccaccacggcggCCCAGcGCAUCAGCc -3'
miRNA:   3'- -GCUGUUUUCuaa-----------GGGUUcUGUAGUCG- -5'
23024 5' -44.9 NC_005178.1 + 3854 1.16 0.003243
Target:  5'- gCGACAAAAGAUUCCCAAGACAUCAGCg -3'
miRNA:   3'- -GCUGUUUUCUAAGGGUUCUGUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.