Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23026 | 5' | -59.7 | NC_005178.1 | + | 20566 | 0.74 | 0.08975 |
Target: 5'- gGGCCaggUCGCGGCGCUGaccucUCGCCUcaacgGCg -3' miRNA: 3'- -UCGGa--AGCGCCGCGAU-----GGCGGAa----CGa -5' |
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23026 | 5' | -59.7 | NC_005178.1 | + | 20809 | 0.66 | 0.364341 |
Target: 5'- cGCCcUCGCGGUuuGCU-CgGCCaUGCa -3' miRNA: 3'- uCGGaAGCGCCG--CGAuGgCGGaACGa -5' |
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23026 | 5' | -59.7 | NC_005178.1 | + | 5980 | 0.66 | 0.364341 |
Target: 5'- gAGUCguucCGgGGCGCUGCC-CCagGCUg -3' miRNA: 3'- -UCGGaa--GCgCCGCGAUGGcGGaaCGA- -5' |
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23026 | 5' | -59.7 | NC_005178.1 | + | 26165 | 0.66 | 0.355704 |
Target: 5'- cGCCUUuaucaucaucggCGCGGCGgugGCCGCUgcggGCg -3' miRNA: 3'- uCGGAA------------GCGCCGCga-UGGCGGaa--CGa -5' |
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23026 | 5' | -59.7 | NC_005178.1 | + | 12694 | 0.66 | 0.330667 |
Target: 5'- cGGCCUgcUCGCGGCGCgUAUCaaGCUcgGUa -3' miRNA: 3'- -UCGGA--AGCGCCGCG-AUGG--CGGaaCGa -5' |
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23026 | 5' | -59.7 | NC_005178.1 | + | 29106 | 0.68 | 0.270363 |
Target: 5'- cGCCUg-GCGGCGaCUacuggACCGCgUUUGCUa -3' miRNA: 3'- uCGGAagCGCCGC-GA-----UGGCG-GAACGA- -5' |
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23026 | 5' | -59.7 | NC_005178.1 | + | 22870 | 0.68 | 0.250142 |
Target: 5'- cGGCggUCGUGGCccagGCUAUCGCCgaUGCg -3' miRNA: 3'- -UCGgaAGCGCCG----CGAUGGCGGa-ACGa -5' |
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23026 | 5' | -59.7 | NC_005178.1 | + | 32731 | 0.68 | 0.250142 |
Target: 5'- uGGCCgacCGUGGauaGCUGCCGCauaacgUGCg -3' miRNA: 3'- -UCGGaa-GCGCCg--CGAUGGCGga----ACGa -5' |
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23026 | 5' | -59.7 | NC_005178.1 | + | 10933 | 0.68 | 0.243685 |
Target: 5'- cGCCgagUCGaucCGGCGCggcCCGCCUccUGCc -3' miRNA: 3'- uCGGa--AGC---GCCGCGau-GGCGGA--ACGa -5' |
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23026 | 5' | -59.7 | NC_005178.1 | + | 12110 | 0.69 | 0.231187 |
Target: 5'- gGGCCUggcCGaugGGCGC-GCCGCCU-GCg -3' miRNA: 3'- -UCGGAa--GCg--CCGCGaUGGCGGAaCGa -5' |
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23026 | 5' | -59.7 | NC_005178.1 | + | 21375 | 0.7 | 0.202295 |
Target: 5'- cGCCUUCGCGGCGgCccccACCaCCUgGCa -3' miRNA: 3'- uCGGAAGCGCCGC-Ga---UGGcGGAaCGa -5' |
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23026 | 5' | -59.7 | NC_005178.1 | + | 20966 | 0.7 | 0.176591 |
Target: 5'- aGGUCUUCGcCGGCGCcAUCGUCgugGCg -3' miRNA: 3'- -UCGGAAGC-GCCGCGaUGGCGGaa-CGa -5' |
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23026 | 5' | -59.7 | NC_005178.1 | + | 28232 | 0.71 | 0.149612 |
Target: 5'- cGCCgcCGCuauccaGGcCGCUGCCGCCUcGCUg -3' miRNA: 3'- uCGGaaGCG------CC-GCGAUGGCGGAaCGA- -5' |
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23026 | 5' | -59.7 | NC_005178.1 | + | 37128 | 0.69 | 0.219233 |
Target: 5'- cGCCa--GCGaGUGCUGCCGCCUcGUc -3' miRNA: 3'- uCGGaagCGC-CGCGAUGGCGGAaCGa -5' |
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23026 | 5' | -59.7 | NC_005178.1 | + | 3288 | 0.73 | 0.12291 |
Target: 5'- cGCCcgaccUCGCGGCugacGUUGCCGaCCUUGCg -3' miRNA: 3'- uCGGa----AGCGCCG----CGAUGGC-GGAACGa -5' |
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23026 | 5' | -59.7 | NC_005178.1 | + | 31637 | 0.73 | 0.112878 |
Target: 5'- aGGCCg--GCGGCGgUACUGCCUUGa- -3' miRNA: 3'- -UCGGaagCGCCGCgAUGGCGGAACga -5' |
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23026 | 5' | -59.7 | NC_005178.1 | + | 11159 | 0.74 | 0.097842 |
Target: 5'- cAGCag-CGCGGCGCUGCCgGCCgagGUg -3' miRNA: 3'- -UCGgaaGCGCCGCGAUGG-CGGaa-CGa -5' |
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23026 | 5' | -59.7 | NC_005178.1 | + | 4441 | 0.74 | 0.092374 |
Target: 5'- cGGCCUgcacuucaagggUCGCGGCGCUGCgCGaCCggagUUGCUc -3' miRNA: 3'- -UCGGA------------AGCGCCGCGAUG-GC-GG----AACGA- -5' |
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23026 | 5' | -59.7 | NC_005178.1 | + | 21075 | 0.78 | 0.044491 |
Target: 5'- aGGCCggUgGCGGUGCUGCCGCCcacgGCg -3' miRNA: 3'- -UCGGa-AgCGCCGCGAUGGCGGaa--CGa -5' |
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23026 | 5' | -59.7 | NC_005178.1 | + | 11744 | 0.66 | 0.355704 |
Target: 5'- cAGCgaUUCGaCGGUGCgcagGCCGucgaCCUUGCg -3' miRNA: 3'- -UCGg-AAGC-GCCGCGa---UGGC----GGAACGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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