Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 6888 | 1.14 | 0.000098 |
Target: 5'- aCCCCCACUGCCAGGCAAUGAGGCGGCg -3' miRNA: 3'- -GGGGGUGACGGUCCGUUACUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 16653 | 0.8 | 0.036916 |
Target: 5'- aUCCCGCUGCCAGcCAAUggcGAGGCGGUc -3' miRNA: 3'- gGGGGUGACGGUCcGUUA---CUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 7398 | 0.76 | 0.07863 |
Target: 5'- gCCCCUcugucgGCU-CCAGGCGAUGAaGGCGGa -3' miRNA: 3'- -GGGGG------UGAcGGUCCGUUACU-CCGCCg -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 25495 | 0.76 | 0.080919 |
Target: 5'- uUCCCGCUGUU--GCAggGAGGCGGCg -3' miRNA: 3'- gGGGGUGACGGucCGUuaCUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 28328 | 0.75 | 0.088175 |
Target: 5'- aCCCCACUGacaCCAuuggcGGCGGccagcGAGGCGGCa -3' miRNA: 3'- gGGGGUGAC---GGU-----CCGUUa----CUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 7366 | 0.75 | 0.090728 |
Target: 5'- aCCCCCAUgcGCUGGaGCAGccGGGCGGCg -3' miRNA: 3'- -GGGGGUGa-CGGUC-CGUUacUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 6829 | 0.75 | 0.090728 |
Target: 5'- gCCUCAUUGCCuGGCAGUGGGG-GuGCu -3' miRNA: 3'- gGGGGUGACGGuCCGUUACUCCgC-CG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 20577 | 0.75 | 0.093352 |
Target: 5'- gCgCCCACUucGCCGGGuCGGgguuaccgGGGGCGGCg -3' miRNA: 3'- -GgGGGUGA--CGGUCC-GUUa-------CUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 15032 | 0.75 | 0.095774 |
Target: 5'- gCCUauCACUGCCuggugugGGGCGuUGAGGCGGUc -3' miRNA: 3'- gGGG--GUGACGG-------UCCGUuACUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 27658 | 0.73 | 0.123823 |
Target: 5'- gCCgCCGCUGCCguGGGCAu--GGGCGcGCa -3' miRNA: 3'- -GGgGGUGACGG--UCCGUuacUCCGC-CG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 20539 | 0.73 | 0.123823 |
Target: 5'- aCCUUCA--GCUGGGCGGUGGcGGCGGCg -3' miRNA: 3'- -GGGGGUgaCGGUCCGUUACU-CCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 15092 | 0.73 | 0.127334 |
Target: 5'- gCCCCACa-CCAGGCAGUGAuaGGCccgcugcauGGCg -3' miRNA: 3'- gGGGGUGacGGUCCGUUACU--CCG---------CCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 9585 | 0.73 | 0.134634 |
Target: 5'- uUCCCGC-GCCAGGCGGcgcuGGCGGUc -3' miRNA: 3'- gGGGGUGaCGGUCCGUUacu-CCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 26286 | 0.71 | 0.163308 |
Target: 5'- gCCggaaCCACcGCCGGGCAAcUGuccgccauGGCGGCg -3' miRNA: 3'- -GGg---GGUGaCGGUCCGUU-ACu-------CCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 26628 | 0.71 | 0.171991 |
Target: 5'- aCgCCUAUaGCCAGGCAAUGgacgagcGGGCGaGCc -3' miRNA: 3'- -GgGGGUGaCGGUCCGUUAC-------UCCGC-CG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 20915 | 0.71 | 0.177204 |
Target: 5'- aCCCCGCU-CCAGGaCGccGAGGUcaucGGCg -3' miRNA: 3'- gGGGGUGAcGGUCC-GUuaCUCCG----CCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 10181 | 0.7 | 0.208169 |
Target: 5'- gCCgCCAUgGCCAGGUc-UGAGGUGGa -3' miRNA: 3'- -GGgGGUGaCGGUCCGuuACUCCGCCg -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 10309 | 0.69 | 0.224159 |
Target: 5'- gUCCUgGCggauagccgaggGCCGGGCGcgGAGG-GGCg -3' miRNA: 3'- -GGGGgUGa-----------CGGUCCGUuaCUCCgCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 36388 | 0.69 | 0.22534 |
Target: 5'- uCgUCCGCUGUCGGGCAucagauUGAGaaaCGGCa -3' miRNA: 3'- -GgGGGUGACGGUCCGUu-----ACUCc--GCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 27935 | 0.69 | 0.250087 |
Target: 5'- -aCCCAgUUGCCcuGGGCGGccugGAGGuCGGCg -3' miRNA: 3'- ggGGGU-GACGG--UCCGUUa---CUCC-GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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