Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 2717 | 0.66 | 0.389327 |
Target: 5'- gCCgCGCUGCUgaacgccgcccuGGGC---GAGGUGGCc -3' miRNA: 3'- gGGgGUGACGG------------UCCGuuaCUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 3684 | 0.67 | 0.325677 |
Target: 5'- aCCCCCGCcugacuguuguagGgCAGGCuguucuucauaucGAUGcccAGGCGGCc -3' miRNA: 3'- -GGGGGUGa------------CgGUCCG-------------UUAC---UCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 3752 | 0.68 | 0.284123 |
Target: 5'- gCgCCgAUguaGCCGGGCAGUuccuuGGCGGCg -3' miRNA: 3'- -GgGGgUGa--CGGUCCGUUAcu---CCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 3986 | 0.68 | 0.267347 |
Target: 5'- cCCUCCGCUucgugcagcGcCCAGGCuucguugggggucAUGuGGCGGCg -3' miRNA: 3'- -GGGGGUGA---------C-GGUCCGu------------UACuCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 4543 | 0.66 | 0.380383 |
Target: 5'- --aCCACUGCCGGuaGCGcUG-GGCGGg -3' miRNA: 3'- gggGGUGACGGUC--CGUuACuCCGCCg -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 6829 | 0.75 | 0.090728 |
Target: 5'- gCCUCAUUGCCuGGCAGUGGGG-GuGCu -3' miRNA: 3'- gGGGGUGACGGuCCGUUACUCCgC-CG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 6888 | 1.14 | 0.000098 |
Target: 5'- aCCCCCACUGCCAGGCAAUGAGGCGGCg -3' miRNA: 3'- -GGGGGUGACGGUCCGUUACUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 7366 | 0.75 | 0.090728 |
Target: 5'- aCCCCCAUgcGCUGGaGCAGccGGGCGGCg -3' miRNA: 3'- -GGGGGUGa-CGGUC-CGUUacUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 7398 | 0.76 | 0.07863 |
Target: 5'- gCCCCUcugucgGCU-CCAGGCGAUGAaGGCGGa -3' miRNA: 3'- -GGGGG------UGAcGGUCCGUUACU-CCGCCg -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 8750 | 0.66 | 0.398408 |
Target: 5'- gCCCU--UGCCguGGGCGacuuggccagcGUGcGGGCGGCg -3' miRNA: 3'- gGGGGugACGG--UCCGU-----------UAC-UCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 8884 | 0.66 | 0.368963 |
Target: 5'- aCCCgGCacgcGCCGGGCGAcuuucuugccgaccUGGuGCGGCu -3' miRNA: 3'- gGGGgUGa---CGGUCCGUU--------------ACUcCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 9495 | 0.66 | 0.389327 |
Target: 5'- gUCCCg--GCUAGGCc--GGGGCGGUu -3' miRNA: 3'- gGGGGugaCGGUCCGuuaCUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 9585 | 0.73 | 0.134634 |
Target: 5'- uUCCCGC-GCCAGGCGGcgcuGGCGGUc -3' miRNA: 3'- gGGGGUGaCGGUCCGUUacu-CCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 10181 | 0.7 | 0.208169 |
Target: 5'- gCCgCCAUgGCCAGGUc-UGAGGUGGa -3' miRNA: 3'- -GGgGGUGaCGGUCCGuuACUCCGCCg -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 10309 | 0.69 | 0.224159 |
Target: 5'- gUCCUgGCggauagccgaggGCCGGGCGcgGAGG-GGCg -3' miRNA: 3'- -GGGGgUGa-----------CGGUCCGUuaCUCCgCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 10436 | 0.69 | 0.256614 |
Target: 5'- -gCUCGCUGCCacaAGGCGcUGGuacGGUGGCg -3' miRNA: 3'- ggGGGUGACGG---UCCGUuACU---CCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 10718 | 0.66 | 0.398408 |
Target: 5'- -aCUCACcGCCAGGau----GGCGGCa -3' miRNA: 3'- ggGGGUGaCGGUCCguuacuCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 10858 | 0.68 | 0.29873 |
Target: 5'- aCgCUCGCgGCUGGGCucggccagGAUGGcGGCGGCg -3' miRNA: 3'- -GgGGGUGaCGGUCCG--------UUACU-CCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 11818 | 0.68 | 0.26328 |
Target: 5'- aCCCCCAUgGCuCGGGCcAcgGccGUGGCa -3' miRNA: 3'- -GGGGGUGaCG-GUCCG-UuaCucCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 14896 | 0.68 | 0.283408 |
Target: 5'- -aUCCAUUgcGCCAGGCGguugacccagaacGUGAugcaGGCGGCg -3' miRNA: 3'- ggGGGUGA--CGGUCCGU-------------UACU----CCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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