miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23027 3' -59.6 NC_005178.1 + 16653 0.8 0.036916
Target:  5'- aUCCCGCUGCCAGcCAAUggcGAGGCGGUc -3'
miRNA:   3'- gGGGGUGACGGUCcGUUA---CUCCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 21769 0.67 0.306249
Target:  5'- gCUCCGCUuuccaacgccaGCCAGGC-----GGCGGCg -3'
miRNA:   3'- gGGGGUGA-----------CGGUCCGuuacuCCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 28494 0.67 0.345175
Target:  5'- aCUCCGCUGCUgcuGGaCAucaaccaacgaggAUG-GGCGGCg -3'
miRNA:   3'- gGGGGUGACGGu--CC-GU-------------UACuCCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 28086 0.66 0.364633
Target:  5'- aCCCgCCAgcuaggggcgucuCUGCUuuccggguuuggccuGGGCGGUGGcaccgauGGCGGCg -3'
miRNA:   3'- -GGG-GGU-------------GACGG---------------UCCGUUACU-------CCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 2717 0.66 0.389327
Target:  5'- gCCgCGCUGCUgaacgccgcccuGGGC---GAGGUGGCc -3'
miRNA:   3'- gGGgGUGACGG------------UCCGuuaCUCCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 19894 0.66 0.389327
Target:  5'- gCCCUAUggaugUGCCGGGCu----GGCGGa -3'
miRNA:   3'- gGGGGUG-----ACGGUCCGuuacuCCGCCg -5'
23027 3' -59.6 NC_005178.1 + 8750 0.66 0.398408
Target:  5'- gCCCU--UGCCguGGGCGacuuggccagcGUGcGGGCGGCg -3'
miRNA:   3'- gGGGGugACGG--UCCGU-----------UAC-UCCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 10718 0.66 0.398408
Target:  5'- -aCUCACcGCCAGGau----GGCGGCa -3'
miRNA:   3'- ggGGGUGaCGGUCCguuacuCCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 28699 0.66 0.398408
Target:  5'- aCCCCgACcagauggcgGCCGacaugugggccGGCAA--GGGCGGCg -3'
miRNA:   3'- -GGGGgUGa--------CGGU-----------CCGUUacUCCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 22261 0.68 0.297244
Target:  5'- -gCCgACcGCCAGGCuggcccgccAGGCGGCg -3'
miRNA:   3'- ggGGgUGaCGGUCCGuuac-----UCCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 33901 0.68 0.284123
Target:  5'- cCUgCCGC-GCCuggcGGCGAUGcucGGCGGCc -3'
miRNA:   3'- -GGgGGUGaCGGu---CCGUUACu--CCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 10436 0.69 0.256614
Target:  5'- -gCUCGCUGCCacaAGGCGcUGGuacGGUGGCg -3'
miRNA:   3'- ggGGGUGACGG---UCCGUuACU---CCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 6829 0.75 0.090728
Target:  5'- gCCUCAUUGCCuGGCAGUGGGG-GuGCu -3'
miRNA:   3'- gGGGGUGACGGuCCGUUACUCCgC-CG- -5'
23027 3' -59.6 NC_005178.1 + 15032 0.75 0.095774
Target:  5'- gCCUauCACUGCCuggugugGGGCGuUGAGGCGGUc -3'
miRNA:   3'- gGGG--GUGACGG-------UCCGUuACUCCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 27658 0.73 0.123823
Target:  5'- gCCgCCGCUGCCguGGGCAu--GGGCGcGCa -3'
miRNA:   3'- -GGgGGUGACGG--UCCGUuacUCCGC-CG- -5'
23027 3' -59.6 NC_005178.1 + 26286 0.71 0.163308
Target:  5'- gCCggaaCCACcGCCGGGCAAcUGuccgccauGGCGGCg -3'
miRNA:   3'- -GGg---GGUGaCGGUCCGUU-ACu-------CCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 26628 0.71 0.171991
Target:  5'- aCgCCUAUaGCCAGGCAAUGgacgagcGGGCGaGCc -3'
miRNA:   3'- -GgGGGUGaCGGUCCGUUAC-------UCCGC-CG- -5'
23027 3' -59.6 NC_005178.1 + 20915 0.71 0.177204
Target:  5'- aCCCCGCU-CCAGGaCGccGAGGUcaucGGCg -3'
miRNA:   3'- gGGGGUGAcGGUCC-GUuaCUCCG----CCG- -5'
23027 3' -59.6 NC_005178.1 + 10181 0.7 0.208169
Target:  5'- gCCgCCAUgGCCAGGUc-UGAGGUGGa -3'
miRNA:   3'- -GGgGGUGaCGGUCCGuuACUCCGCCg -5'
23027 3' -59.6 NC_005178.1 + 10309 0.69 0.224159
Target:  5'- gUCCUgGCggauagccgaggGCCGGGCGcgGAGG-GGCg -3'
miRNA:   3'- -GGGGgUGa-----------CGGUCCGUuaCUCCgCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.