Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23028 | 3' | -57.6 | NC_005178.1 | + | 26975 | 0.66 | 0.486051 |
Target: 5'- -cGCGCCUGGAucgcuACCuGGAGgaCGAgGCa -3' miRNA: 3'- caUGCGGGCCU-----UGGuCCUC--GCUgUGc -5' |
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23028 | 3' | -57.6 | NC_005178.1 | + | 28296 | 0.7 | 0.290267 |
Target: 5'- -gGCGCugcgggagcugCCGGGGCCGcuGGAGUGGCugGu -3' miRNA: 3'- caUGCG-----------GGCCUUGGU--CCUCGCUGugC- -5' |
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23028 | 3' | -57.6 | NC_005178.1 | + | 28982 | 0.67 | 0.455594 |
Target: 5'- -cGCGCCCcuGGCCuGG-GCGGCACc -3' miRNA: 3'- caUGCGGGccUUGGuCCuCGCUGUGc -5' |
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23028 | 3' | -57.6 | NC_005178.1 | + | 29042 | 0.7 | 0.283002 |
Target: 5'- gGUGcCGCCCaG-GCCAGGGGCG-CGCa -3' miRNA: 3'- -CAU-GCGGGcCuUGGUCCUCGCuGUGc -5' |
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23028 | 3' | -57.6 | NC_005178.1 | + | 31223 | 0.66 | 0.465634 |
Target: 5'- cGUuCGCCCcGGACUGGG-GCGACAg- -3' miRNA: 3'- -CAuGCGGGcCUUGGUCCuCGCUGUgc -5' |
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23028 | 3' | -57.6 | NC_005178.1 | + | 31318 | 0.71 | 0.230007 |
Target: 5'- aUGCGCCUGGcgccgcGCCGGGAGUucGAgGCGa -3' miRNA: 3'- cAUGCGGGCCu-----UGGUCCUCG--CUgUGC- -5' |
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23028 | 3' | -57.6 | NC_005178.1 | + | 35604 | 0.72 | 0.212402 |
Target: 5'- ---gGCCCGGAAgCuGGGGCGACGg- -3' miRNA: 3'- caugCGGGCCUUgGuCCUCGCUGUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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