miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23028 5' -55.1 NC_005178.1 + 3018 0.66 0.613817
Target:  5'- gGGCG-GCCGCGA---GGaUCGCGGGc- -3'
miRNA:   3'- -UCGCaCGGCGCUuaaCC-AGUGCUCcu -5'
23028 5' -55.1 NC_005178.1 + 8253 1.09 0.000663
Target:  5'- aAGCGUGCCGCGAAUUGGUCACGAGGAu -3'
miRNA:   3'- -UCGCACGGCGCUUAACCAGUGCUCCU- -5'
23028 5' -55.1 NC_005178.1 + 20253 0.71 0.339146
Target:  5'- gAGCG-GCCGCGAccuUUGGcCucuacaaccccgACGAGGAa -3'
miRNA:   3'- -UCGCaCGGCGCUu--AACCaG------------UGCUCCU- -5'
23028 5' -55.1 NC_005178.1 + 28260 0.67 0.56879
Target:  5'- gAGCGUGCCGCcagca-GUCGCcAGGGc -3'
miRNA:   3'- -UCGCACGGCGcuuaacCAGUGcUCCU- -5'
23028 5' -55.1 NC_005178.1 + 29001 0.66 0.62514
Target:  5'- cGGCGaugGCCGUGcc--GGaCGCGGGGAu -3'
miRNA:   3'- -UCGCa--CGGCGCuuaaCCaGUGCUCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.