miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23029 5' -58.1 NC_005178.1 + 11332 0.66 0.459227
Target:  5'- aGCUcgGGGCGGuUGGAGUgCAGGUa--- -3'
miRNA:   3'- aUGG--CCCGCU-ACCUCGgGUCCAaagc -5'
23029 5' -58.1 NC_005178.1 + 35518 0.66 0.458219
Target:  5'- gGCCGGGCGGguacggcuuaccuUGGcGCCC-GGUcagCGu -3'
miRNA:   3'- aUGGCCCGCU-------------ACCuCGGGuCCAaa-GC- -5'
23029 5' -58.1 NC_005178.1 + 25740 0.66 0.435365
Target:  5'- gACCGGGuCGAUGGccgcgagcaguuuGCCCAGc--UCGg -3'
miRNA:   3'- aUGGCCC-GCUACCu------------CGGGUCcaaAGC- -5'
23029 5' -58.1 NC_005178.1 + 18214 0.66 0.419861
Target:  5'- gGCCGGGCcaaAUGGAGaacaucagCCAGGUUa-- -3'
miRNA:   3'- aUGGCCCGc--UACCUCg-------GGUCCAAagc -5'
23029 5' -58.1 NC_005178.1 + 22734 0.67 0.373644
Target:  5'- gGCCuGGGCGA-GGucGCCCuGGGcUUCGa -3'
miRNA:   3'- aUGG-CCCGCUaCCu-CGGG-UCCaAAGC- -5'
23029 5' -58.1 NC_005178.1 + 23511 0.68 0.322918
Target:  5'- cGCCGGGCGcccUGGccgucGCCCuGGgcgUCGg -3'
miRNA:   3'- aUGGCCCGCu--ACCu----CGGGuCCaa-AGC- -5'
23029 5' -58.1 NC_005178.1 + 22287 0.69 0.299549
Target:  5'- cGgCGGGCGAUGaAGCCCAGcagagcgUCGa -3'
miRNA:   3'- aUgGCCCGCUACcUCGGGUCcaa----AGC- -5'
23029 5' -58.1 NC_005178.1 + 26131 0.7 0.263547
Target:  5'- -cUCGGGCGAUGucGUCCAGGccgUCGc -3'
miRNA:   3'- auGGCCCGCUACcuCGGGUCCaa-AGC- -5'
23029 5' -58.1 NC_005178.1 + 28122 0.7 0.260824
Target:  5'- gGCCuGGGCGGUGGcaccgauggcggcGCCCAGGggcugacggUCGg -3'
miRNA:   3'- aUGG-CCCGCUACCu------------CGGGUCCaa-------AGC- -5'
23029 5' -58.1 NC_005178.1 + 4500 0.7 0.243681
Target:  5'- gACCuGGGCGGUGGuGGCUUGGGUggUGg -3'
miRNA:   3'- aUGG-CCCGCUACC-UCGGGUCCAaaGC- -5'
23029 5' -58.1 NC_005178.1 + 8934 1.06 0.000492
Target:  5'- gUACCGGGCGAUGGAGCCCAGGUUUCGc -3'
miRNA:   3'- -AUGGCCCGCUACCUCGGGUCCAAAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.