miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23030 3' -55.7 NC_005178.1 + 29143 0.66 0.551947
Target:  5'- cAGCCCgcggGUUC-AGGCGCUgcUGugGAa -3'
miRNA:   3'- uUCGGGa---CAAGcUUCGCGA--GCugCUa -5'
23030 3' -55.7 NC_005178.1 + 18480 0.66 0.551947
Target:  5'- uGAGCCCcGUUacCGuugcAGCGCgagCGGCGAa -3'
miRNA:   3'- -UUCGGGaCAA--GCu---UCGCGa--GCUGCUa -5'
23030 3' -55.7 NC_005178.1 + 31328 0.66 0.551947
Target:  5'- -cGCUUUGcaggauauuugUCGAggcgcucaGGCGCUCGACGAUg -3'
miRNA:   3'- uuCGGGACa----------AGCU--------UCGCGAGCUGCUA- -5'
23030 3' -55.7 NC_005178.1 + 22720 0.66 0.540743
Target:  5'- -cGCCCUGggcuucgaugaUCGGAGCguuguGCUCGGCGu- -3'
miRNA:   3'- uuCGGGACa----------AGCUUCG-----CGAGCUGCua -5'
23030 3' -55.7 NC_005178.1 + 15832 0.66 0.518577
Target:  5'- -uGCCCUccaggUCGAgcAGCaGCUCGugGAg -3'
miRNA:   3'- uuCGGGAca---AGCU--UCG-CGAGCugCUa -5'
23030 3' -55.7 NC_005178.1 + 9575 0.66 0.507629
Target:  5'- -uGCCCUGcgccgCGcuGCGCUgGGCGGUc -3'
miRNA:   3'- uuCGGGACaa---GCuuCGCGAgCUGCUA- -5'
23030 3' -55.7 NC_005178.1 + 4239 0.66 0.4957
Target:  5'- gAGGCCCgcga-GAAGCGCgcccuggcucaccUCGACGAg -3'
miRNA:   3'- -UUCGGGacaagCUUCGCG-------------AGCUGCUa -5'
23030 3' -55.7 NC_005178.1 + 28913 0.67 0.486036
Target:  5'- gAGGaaCUGgaCGAGGCGCUCGACc-- -3'
miRNA:   3'- -UUCggGACaaGCUUCGCGAGCUGcua -5'
23030 3' -55.7 NC_005178.1 + 27609 0.67 0.444232
Target:  5'- cGGCCCUGUUCGuuGaGCUgGAgGAc -3'
miRNA:   3'- uUCGGGACAAGCuuCgCGAgCUgCUa -5'
23030 3' -55.7 NC_005178.1 + 7076 0.72 0.21722
Target:  5'- cGGCCCUGggCGAGGCGgugacCUCGGuCGAg -3'
miRNA:   3'- uUCGGGACaaGCUUCGC-----GAGCU-GCUa -5'
23030 3' -55.7 NC_005178.1 + 10541 1.03 0.001246
Target:  5'- cAAGCCCUGUUCGAAGCGCUCGACGAUc -3'
miRNA:   3'- -UUCGGGACAAGCUUCGCGAGCUGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.