miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23030 5' -56.5 NC_005178.1 + 10503 1.14 0.000205
Target:  5'- gCCACCGUACCAGCGCCUUGUGGCAGCg -3'
miRNA:   3'- -GGUGGCAUGGUCGCGGAACACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 28182 0.78 0.091717
Target:  5'- uCCGCCucgGCCGGCGCCcUGgcgacugcUGGCGGCa -3'
miRNA:   3'- -GGUGGca-UGGUCGCGGaAC--------ACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 22943 0.76 0.125827
Target:  5'- gCCGCUGgcCCAGUGCCU-GUGGUgcugaAGCg -3'
miRNA:   3'- -GGUGGCauGGUCGCGGAaCACCG-----UCG- -5'
23030 5' -56.5 NC_005178.1 + 5538 0.75 0.140923
Target:  5'- gUCGCC-UGCCuGCGCCUg--GGCGGCu -3'
miRNA:   3'- -GGUGGcAUGGuCGCGGAacaCCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 24073 0.73 0.202019
Target:  5'- gCugCGUACCAGgGCUUUcUGGCcGCu -3'
miRNA:   3'- gGugGCAUGGUCgCGGAAcACCGuCG- -5'
23030 5' -56.5 NC_005178.1 + 22200 0.72 0.256826
Target:  5'- uCCACCGgcACUGGCGCauaagggGGCAGCu -3'
miRNA:   3'- -GGUGGCa-UGGUCGCGgaaca--CCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 12075 0.71 0.263615
Target:  5'- gUugCG-ACCAGCGCCUgguggaGUGGUcGCg -3'
miRNA:   3'- gGugGCaUGGUCGCGGAa-----CACCGuCG- -5'
23030 5' -56.5 NC_005178.1 + 3759 0.71 0.292233
Target:  5'- gCGCCGgGCCAuCGCCaaG-GGCGGCa -3'
miRNA:   3'- gGUGGCaUGGUcGCGGaaCaCCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 28958 0.7 0.299757
Target:  5'- aUCGCCGUgcGCCAggugacccugcGCGCCccUGgccugGGCGGCa -3'
miRNA:   3'- -GGUGGCA--UGGU-----------CGCGGa-ACa----CCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 5349 0.7 0.299757
Target:  5'- uCCAgcUCGcGCCGGC-CCUgaacgGUGGCGGCc -3'
miRNA:   3'- -GGU--GGCaUGGUCGcGGAa----CACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 31296 0.7 0.30743
Target:  5'- -aGCCGUGacCCAGCGCCg---GGCuauGCg -3'
miRNA:   3'- ggUGGCAU--GGUCGCGGaacaCCGu--CG- -5'
23030 5' -56.5 NC_005178.1 + 6565 0.7 0.331344
Target:  5'- gCCuCCGUGCgCAGCGauCCUUGUGGaAGg -3'
miRNA:   3'- -GGuGGCAUG-GUCGC--GGAACACCgUCg -5'
23030 5' -56.5 NC_005178.1 + 17211 0.7 0.331344
Target:  5'- gCCACCGU--CAGCGCUcgggcauggGUGGCcGCg -3'
miRNA:   3'- -GGUGGCAugGUCGCGGaa-------CACCGuCG- -5'
23030 5' -56.5 NC_005178.1 + 30633 0.7 0.339614
Target:  5'- gCCACCGauuucggcagcACCAGCGCCUg--GGuCGGUu -3'
miRNA:   3'- -GGUGGCa----------UGGUCGCGGAacaCC-GUCG- -5'
23030 5' -56.5 NC_005178.1 + 20554 0.7 0.339614
Target:  5'- uUACCGggGgCGGCGaCCUUcagcugggcgGUGGCGGCg -3'
miRNA:   3'- gGUGGCa-UgGUCGC-GGAA----------CACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 17146 0.69 0.356599
Target:  5'- gCCACCcaUGCCcgAGCGCUgacgGUGGCcaaGGCg -3'
miRNA:   3'- -GGUGGc-AUGG--UCGCGGaa--CACCG---UCG- -5'
23030 5' -56.5 NC_005178.1 + 29476 0.69 0.365312
Target:  5'- -aACCGaGCCAGCGCCc---GGCGGg -3'
miRNA:   3'- ggUGGCaUGGUCGCGGaacaCCGUCg -5'
23030 5' -56.5 NC_005178.1 + 19741 0.69 0.374172
Target:  5'- aCCGCCGcgcucgACCGuCGCCaccaUGGCGGCa -3'
miRNA:   3'- -GGUGGCa-----UGGUcGCGGaac-ACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 17559 0.69 0.374172
Target:  5'- gCCGCCGaauggcuacaacUGCCGGUGCCgaaucguuccgUUGacGGCGGCc -3'
miRNA:   3'- -GGUGGC------------AUGGUCGCGG-----------AACa-CCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 21677 0.69 0.382269
Target:  5'- gCCGCCGaguaACCGGCcaucuucGCCUgg-GGCGGUa -3'
miRNA:   3'- -GGUGGCa---UGGUCG-------CGGAacaCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.