miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23030 5' -56.5 NC_005178.1 + 3218 0.67 0.490013
Target:  5'- gCC-CC-UGCCAGUGCUUcuccagcagugcaUG-GGCAGCg -3'
miRNA:   3'- -GGuGGcAUGGUCGCGGA-------------ACaCCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 3445 0.66 0.512195
Target:  5'- uCCACCGgccugGCCgAGUcgGCCcugGUGGUGGUc -3'
miRNA:   3'- -GGUGGCa----UGG-UCG--CGGaa-CACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 3759 0.71 0.292233
Target:  5'- gCGCCGgGCCAuCGCCaaG-GGCGGCa -3'
miRNA:   3'- gGUGGCaUGGUcGCGGaaCaCCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 3983 0.67 0.490013
Target:  5'- uCCGCuuCGUG-CAGCGCCcaggcUucguugggggucaUGUGGCGGCg -3'
miRNA:   3'- -GGUG--GCAUgGUCGCGG-----A-------------ACACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 5349 0.7 0.299757
Target:  5'- uCCAgcUCGcGCCGGC-CCUgaacgGUGGCGGCc -3'
miRNA:   3'- -GGU--GGCaUGGUCGcGGAa----CACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 5538 0.75 0.140923
Target:  5'- gUCGCC-UGCCuGCGCCUg--GGCGGCu -3'
miRNA:   3'- -GGUGGcAUGGuCGCGGAacaCCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 6050 0.66 0.522903
Target:  5'- -aGCCGUGaugaagaCGGUGCCgagggGUGGCcGCc -3'
miRNA:   3'- ggUGGCAUg------GUCGCGGaa---CACCGuCG- -5'
23030 5' -56.5 NC_005178.1 + 6565 0.7 0.331344
Target:  5'- gCCuCCGUGCgCAGCGauCCUUGUGGaAGg -3'
miRNA:   3'- -GGuGGCAUG-GUCGC--GGAACACCgUCg -5'
23030 5' -56.5 NC_005178.1 + 8755 0.66 0.544567
Target:  5'- -uGCCGUgggcgacuugGCCAGCGUgcg--GGCGGCg -3'
miRNA:   3'- ggUGGCA----------UGGUCGCGgaacaCCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 9325 0.66 0.533696
Target:  5'- aCGCCGUuuCCuGCGCCUgcgacgagUGccUGGCAcgGCg -3'
miRNA:   3'- gGUGGCAu-GGuCGCGGA--------AC--ACCGU--CG- -5'
23030 5' -56.5 NC_005178.1 + 9402 0.67 0.501578
Target:  5'- gCGCCGUGCCAG-GCaCUcGUcGCAGg -3'
miRNA:   3'- gGUGGCAUGGUCgCG-GAaCAcCGUCg -5'
23030 5' -56.5 NC_005178.1 + 10503 1.14 0.000205
Target:  5'- gCCACCGUACCAGCGCCUUGUGGCAGCg -3'
miRNA:   3'- -GGUGGCAUGGUCGCGGAACACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 11228 0.66 0.543476
Target:  5'- aCCAUCGUcgcguCCAGCGUCUUcggcccaauccugGUGGUuuaccuGCa -3'
miRNA:   3'- -GGUGGCAu----GGUCGCGGAA-------------CACCGu-----CG- -5'
23030 5' -56.5 NC_005178.1 + 12075 0.71 0.263615
Target:  5'- gUugCG-ACCAGCGCCUgguggaGUGGUcGCg -3'
miRNA:   3'- gGugGCaUGGUCGCGGAa-----CACCGuCG- -5'
23030 5' -56.5 NC_005178.1 + 12429 0.66 0.522903
Target:  5'- gCCGCCGg--UAGUgGCCUg--GGCGGCa -3'
miRNA:   3'- -GGUGGCaugGUCG-CGGAacaCCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 12962 0.68 0.444085
Target:  5'- aCCACCG-GCCAgcaacugcgccgauuGCGCCUUGUccCAGUc -3'
miRNA:   3'- -GGUGGCaUGGU---------------CGCGGAACAccGUCG- -5'
23030 5' -56.5 NC_005178.1 + 13019 0.66 0.522903
Target:  5'- cCCGCCGUGaaGGUGCagcUGcUGGcCAGCc -3'
miRNA:   3'- -GGUGGCAUggUCGCGga-AC-ACC-GUCG- -5'
23030 5' -56.5 NC_005178.1 + 13115 0.68 0.40161
Target:  5'- gCCACCGcUAuggaggugcuCCAGCGCCU---GGcCAGCu -3'
miRNA:   3'- -GGUGGC-AU----------GGUCGCGGAacaCC-GUCG- -5'
23030 5' -56.5 NC_005178.1 + 13870 0.67 0.470338
Target:  5'- cCCGacCCGaagGCCAGCGCCgcccggcgUGaacgGGcCAGCg -3'
miRNA:   3'- -GGU--GGCa--UGGUCGCGGa-------ACa---CC-GUCG- -5'
23030 5' -56.5 NC_005178.1 + 17146 0.69 0.356599
Target:  5'- gCCACCcaUGCCcgAGCGCUgacgGUGGCcaaGGCg -3'
miRNA:   3'- -GGUGGc-AUGG--UCGCGGaa--CACCG---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.