miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23031 5' -62.5 NC_005178.1 + 11447 1.09 0.000094
Target:  5'- gAUCAGCCACCAGGCGGGCAGACCGGCa -3'
miRNA:   3'- -UAGUCGGUGGUCCGCCCGUCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 25870 0.77 0.035812
Target:  5'- gGUCAGuaCCGCCAGGCcaugcGGCAGuuGCCGGCg -3'
miRNA:   3'- -UAGUC--GGUGGUCCGc----CCGUC--UGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 22335 0.76 0.046518
Target:  5'- cAUCGcccGCCGCCuGGCGGGCcAGcCUGGCg -3'
miRNA:   3'- -UAGU---CGGUGGuCCGCCCG-UCuGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 32295 0.76 0.047886
Target:  5'- gGUCGGCUcgACCAGGCGGccCAGGgCGGCg -3'
miRNA:   3'- -UAGUCGG--UGGUCCGCCc-GUCUgGCCG- -5'
23031 5' -62.5 NC_005178.1 + 15601 0.75 0.052833
Target:  5'- gGUCAGCCccuugGCCGGGUGguuggcgaacucuuuGGcCAGACCGGCc -3'
miRNA:   3'- -UAGUCGG-----UGGUCCGC---------------CC-GUCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 16213 0.75 0.053756
Target:  5'- cGUCGGgCguGCCGGGCGGGUacuucccgagccGGAUCGGCa -3'
miRNA:   3'- -UAGUCgG--UGGUCCGCCCG------------UCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 33958 0.75 0.056948
Target:  5'- cAUC-GCCGCCAGGCGcGGCAGGacgccCUGGUc -3'
miRNA:   3'- -UAGuCGGUGGUCCGC-CCGUCU-----GGCCG- -5'
23031 5' -62.5 NC_005178.1 + 18166 0.74 0.063892
Target:  5'- -aCAG-CACCAuGGCGGGCuGGGCCaGGCg -3'
miRNA:   3'- uaGUCgGUGGU-CCGCCCG-UCUGG-CCG- -5'
23031 5' -62.5 NC_005178.1 + 3231 0.73 0.075862
Target:  5'- cGUCAGCCGCgAGGuCGGGCGcAUgGGUg -3'
miRNA:   3'- -UAGUCGGUGgUCC-GCCCGUcUGgCCG- -5'
23031 5' -62.5 NC_005178.1 + 37238 0.73 0.078055
Target:  5'- cUCGGCCuCCAGGCgcagcGGGuCGGACuCGGUg -3'
miRNA:   3'- uAGUCGGuGGUCCG-----CCC-GUCUG-GCCG- -5'
23031 5' -62.5 NC_005178.1 + 28268 0.72 0.085006
Target:  5'- ---cGCCGCCAauGGUgucaguGGGguGACCGGCg -3'
miRNA:   3'- uaguCGGUGGU--CCG------CCCguCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 4964 0.72 0.087451
Target:  5'- gGUCGGCCAuuuCCGGGauGGUcccGGCCGGCu -3'
miRNA:   3'- -UAGUCGGU---GGUCCgcCCGu--CUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 5232 0.72 0.097917
Target:  5'- -aUAGCCACUccgGGGCu-GUAGACCGGCg -3'
miRNA:   3'- uaGUCGGUGG---UCCGccCGUCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 20469 0.71 0.100713
Target:  5'- -gCAGCUugGCCAGGUuggucgccuGGGCguccaGGGCCGGCu -3'
miRNA:   3'- uaGUCGG--UGGUCCG---------CCCG-----UCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 20084 0.71 0.106531
Target:  5'- -aCGGCCGgCAG-CGGGCgcGGGCUGGCc -3'
miRNA:   3'- uaGUCGGUgGUCcGCCCG--UCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 16881 0.71 0.107733
Target:  5'- uAUCGGCCugguuuugcaugucCUGGGCcGGCAGGCUGGCc -3'
miRNA:   3'- -UAGUCGGu-------------GGUCCGcCCGUCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 21097 0.7 0.119128
Target:  5'- cUCAGCgCGgcCCAGGUaGGuCAGGCCGGUg -3'
miRNA:   3'- uAGUCG-GU--GGUCCGcCC-GUCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 26361 0.7 0.122487
Target:  5'- ---cGCCGCCAuGGCGGaCAGuugcCCGGCg -3'
miRNA:   3'- uaguCGGUGGU-CCGCCcGUCu---GGCCG- -5'
23031 5' -62.5 NC_005178.1 + 12466 0.7 0.132001
Target:  5'- aGUCAccGCCACCGGGguCGGGCAcGguugagccaaggccGCCGGUa -3'
miRNA:   3'- -UAGU--CGGUGGUCC--GCCCGU-C--------------UGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 24395 0.7 0.133099
Target:  5'- --aGGCCGCUuugaacGGCuGGGUcgGGGCCGGCg -3'
miRNA:   3'- uagUCGGUGGu-----CCG-CCCG--UCUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.