miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23031 5' -62.5 NC_005178.1 + 25870 0.77 0.035812
Target:  5'- gGUCAGuaCCGCCAGGCcaugcGGCAGuuGCCGGCg -3'
miRNA:   3'- -UAGUC--GGUGGUCCGc----CCGUC--UGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 11757 0.67 0.215696
Target:  5'- -aCGGCCguggcccgaGCCAuGGgGGuuccgccGCAGGCCGGCc -3'
miRNA:   3'- uaGUCGG---------UGGU-CCgCC-------CGUCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 17632 0.67 0.216263
Target:  5'- -aCGGUCGaguCCAGcGCcGGCaAGACCGGCc -3'
miRNA:   3'- uaGUCGGU---GGUC-CGcCCG-UCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 24120 0.66 0.239969
Target:  5'- gGUC-GUgACCAaggcGGCGGGCuccguGACgGGCg -3'
miRNA:   3'- -UAGuCGgUGGU----CCGCCCGu----CUGgCCG- -5'
23031 5' -62.5 NC_005178.1 + 32393 0.66 0.239969
Target:  5'- -aCAGCCGCgAaagcucgcuugcGGaUGGGCAG-CCGGUg -3'
miRNA:   3'- uaGUCGGUGgU------------CC-GCCCGUCuGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 28565 0.66 0.252616
Target:  5'- ---cGCCACC-GG-GGGCGucGCCGGCa -3'
miRNA:   3'- uaguCGGUGGuCCgCCCGUc-UGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 26191 0.66 0.259143
Target:  5'- --uGGCCGCUgcGGGCGuGGC--GCUGGCu -3'
miRNA:   3'- uagUCGGUGG--UCCGC-CCGucUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 15106 0.66 0.265806
Target:  5'- cUCGGCCA--AGGCGGGCuGuCCaGUa -3'
miRNA:   3'- uAGUCGGUggUCCGCCCGuCuGGcCG- -5'
23031 5' -62.5 NC_005178.1 + 32895 0.66 0.265806
Target:  5'- cAUCAGCgGCUGGGUGaucuccagcGGCGuggucGCCGGCa -3'
miRNA:   3'- -UAGUCGgUGGUCCGC---------CCGUc----UGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 36110 0.67 0.210658
Target:  5'- -aCAuGCCGcCCAGGuUGGGCuGGCgGGUg -3'
miRNA:   3'- uaGU-CGGU-GGUCC-GCCCGuCUGgCCG- -5'
23031 5' -62.5 NC_005178.1 + 20997 0.67 0.210104
Target:  5'- ---cGCUACCGGGUucgccguGGGCGGcagcaccgccACCGGCc -3'
miRNA:   3'- uaguCGGUGGUCCG-------CCCGUC----------UGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 3231 0.73 0.075862
Target:  5'- cGUCAGCCGCgAGGuCGGGCGcAUgGGUg -3'
miRNA:   3'- -UAGUCGGUGgUCC-GCCCGUcUGgCCG- -5'
23031 5' -62.5 NC_005178.1 + 28268 0.72 0.085006
Target:  5'- ---cGCCGCCAauGGUgucaguGGGguGACCGGCg -3'
miRNA:   3'- uaguCGGUGGU--CCG------CCCguCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 16662 0.69 0.143368
Target:  5'- -cCAGCCAau-GGCGaGGCgguccugggcgaucAGGCCGGCg -3'
miRNA:   3'- uaGUCGGUgguCCGC-CCG--------------UCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 2748 0.68 0.165205
Target:  5'- --uGGCCACCaAGGCGGuccgccaggagacGCAG-CUGGCc -3'
miRNA:   3'- uagUCGGUGG-UCCGCC-------------CGUCuGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 12655 0.68 0.169733
Target:  5'- cUCGGCgGCCGgcgcgcuGGCGGGUGGcCUGGUu -3'
miRNA:   3'- uAGUCGgUGGU-------CCGCCCGUCuGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 12098 0.68 0.179605
Target:  5'- --uGGUCGCguGGCGGGCcuGGCCgaugGGCg -3'
miRNA:   3'- uagUCGGUGguCCGCCCGu-CUGG----CCG- -5'
23031 5' -62.5 NC_005178.1 + 25958 0.68 0.186467
Target:  5'- ---uGCCAUCcagcaAGGCGGGCAGAUCaaggacaguuucgguGGCg -3'
miRNA:   3'- uaguCGGUGG-----UCCGCCCGUCUGG---------------CCG- -5'
23031 5' -62.5 NC_005178.1 + 25486 0.68 0.194074
Target:  5'- gAUCGGaugaacaCCGCCAcGCGGGCAGccACCaGCg -3'
miRNA:   3'- -UAGUC-------GGUGGUcCGCCCGUC--UGGcCG- -5'
23031 5' -62.5 NC_005178.1 + 11018 0.66 0.265806
Target:  5'- uGUCGGUgACgCGGG-GGGCAGGa-GGCg -3'
miRNA:   3'- -UAGUCGgUG-GUCCgCCCGUCUggCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.