miRNA display CGI


Results 21 - 40 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23031 5' -62.5 NC_005178.1 + 25486 0.68 0.194074
Target:  5'- gAUCGGaugaacaCCGCCAcGCGGGCAGccACCaGCg -3'
miRNA:   3'- -UAGUC-------GGUGGUcCGCCCGUC--UGGcCG- -5'
23031 5' -62.5 NC_005178.1 + 5601 0.68 0.187967
Target:  5'- -gUAGCCGcCCAGGCGcaGGCAGGCgacauacuucucgaCGGUc -3'
miRNA:   3'- uaGUCGGU-GGUCCGC--CCGUCUG--------------GCCG- -5'
23031 5' -62.5 NC_005178.1 + 25958 0.68 0.186467
Target:  5'- ---uGCCAUCcagcaAGGCGGGCAGAUCaaggacaguuucgguGGCg -3'
miRNA:   3'- uaguCGGUGG-----UCCGCCCGUCUGG---------------CCG- -5'
23031 5' -62.5 NC_005178.1 + 4608 0.68 0.181543
Target:  5'- cUCGaaCCACUGGGCggcguccggcucgauGGGCAGGCCGGa -3'
miRNA:   3'- uAGUc-GGUGGUCCG---------------CCCGUCUGGCCg -5'
23031 5' -62.5 NC_005178.1 + 12098 0.68 0.179605
Target:  5'- --uGGUCGCguGGCGGGCcuGGCCgaugGGCg -3'
miRNA:   3'- uagUCGGUGguCCGCCCGu-CUGG----CCG- -5'
23031 5' -62.5 NC_005178.1 + 12655 0.68 0.169733
Target:  5'- cUCGGCgGCCGgcgcgcuGGCGGGUGGcCUGGUu -3'
miRNA:   3'- uAGUCGgUGGU-------CCGCCCGUCuGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 2748 0.68 0.165205
Target:  5'- --uGGCCACCaAGGCGGuccgccaggagacGCAG-CUGGCc -3'
miRNA:   3'- uagUCGGUGG-UCCGCC-------------CGUCuGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 6895 0.69 0.161222
Target:  5'- cAUUAGCacccccacuGCCAGGCaaugaggcGGCGGAUCGGCa -3'
miRNA:   3'- -UAGUCGg--------UGGUCCGc-------CCGUCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 16599 0.69 0.160785
Target:  5'- -cCGGUCcuugaggucgaagACCAGGCGGG-GGGCgCGGCg -3'
miRNA:   3'- uaGUCGG-------------UGGUCCGCCCgUCUG-GCCG- -5'
23031 5' -62.5 NC_005178.1 + 7391 0.69 0.156899
Target:  5'- uGUCGGCU-CCAGGCGaugaaGGCGGACCcccauGCg -3'
miRNA:   3'- -UAGUCGGuGGUCCGC-----CCGUCUGGc----CG- -5'
23031 5' -62.5 NC_005178.1 + 24219 0.69 0.156899
Target:  5'- -cCAGCCACCAggucGGCGGGgAGuACCucGCc -3'
miRNA:   3'- uaGUCGGUGGU----CCGCCCgUC-UGGc-CG- -5'
23031 5' -62.5 NC_005178.1 + 35168 0.69 0.156899
Target:  5'- -cCGGCCGCCA-GC-GGCAGcUCGGCg -3'
miRNA:   3'- uaGUCGGUGGUcCGcCCGUCuGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 29157 0.69 0.156473
Target:  5'- aGUC-GCCGCCAGGCGGGauugcucCAGgauugaacGCCGuGCc -3'
miRNA:   3'- -UAGuCGGUGGUCCGCCC-------GUC--------UGGC-CG- -5'
23031 5' -62.5 NC_005178.1 + 1658 0.69 0.152681
Target:  5'- gAUCAGCU--CGGGCGGGacucGACCaGGCg -3'
miRNA:   3'- -UAGUCGGugGUCCGCCCgu--CUGG-CCG- -5'
23031 5' -62.5 NC_005178.1 + 13010 0.69 0.152681
Target:  5'- cUgGGUCACCAGGCcGGCcAGcACCuGGCg -3'
miRNA:   3'- uAgUCGGUGGUCCGcCCG-UC-UGG-CCG- -5'
23031 5' -62.5 NC_005178.1 + 25217 0.69 0.152681
Target:  5'- ---cGCCAUCAGcucGCGGGCuuGCUGGCg -3'
miRNA:   3'- uaguCGGUGGUC---CGCCCGucUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 11875 0.69 0.14979
Target:  5'- -gCGGUCACCAGGgcggccaggguguccUGGuccauguGCAGGCCGGCc -3'
miRNA:   3'- uaGUCGGUGGUCC---------------GCC-------CGUCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 16662 0.69 0.143368
Target:  5'- -cCAGCCAau-GGCGaGGCgguccugggcgaucAGGCCGGCg -3'
miRNA:   3'- uaGUCGGUgguCCGC-CCG--------------UCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 11359 0.69 0.140638
Target:  5'- -cCGGCCACCAccUGGGCGGACUcgaacagcucggGGCg -3'
miRNA:   3'- uaGUCGGUGGUccGCCCGUCUGG------------CCG- -5'
23031 5' -62.5 NC_005178.1 + 24395 0.7 0.133099
Target:  5'- --aGGCCGCUuugaacGGCuGGGUcgGGGCCGGCg -3'
miRNA:   3'- uagUCGGUGGu-----CCG-CCCG--UCUGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.