miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23031 5' -62.5 NC_005178.1 + 12466 0.7 0.132001
Target:  5'- aGUCAccGCCACCGGGguCGGGCAcGguugagccaaggccGCCGGUa -3'
miRNA:   3'- -UAGU--CGGUGGUCC--GCCCGU-C--------------UGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 12655 0.68 0.169733
Target:  5'- cUCGGCgGCCGgcgcgcuGGCGGGUGGcCUGGUu -3'
miRNA:   3'- uAGUCGgUGGU-------CCGCCCGUCuGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 13010 0.69 0.152681
Target:  5'- cUgGGUCACCAGGCcGGCcAGcACCuGGCg -3'
miRNA:   3'- uAgUCGGUGGUCCGcCCG-UC-UGG-CCG- -5'
23031 5' -62.5 NC_005178.1 + 15106 0.66 0.265806
Target:  5'- cUCGGCCA--AGGCGGGCuGuCCaGUa -3'
miRNA:   3'- uAGUCGGUggUCCGCCCGuCuGGcCG- -5'
23031 5' -62.5 NC_005178.1 + 15601 0.75 0.052833
Target:  5'- gGUCAGCCccuugGCCGGGUGguuggcgaacucuuuGGcCAGACCGGCc -3'
miRNA:   3'- -UAGUCGG-----UGGUCCGC---------------CC-GUCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 16213 0.75 0.053756
Target:  5'- cGUCGGgCguGCCGGGCGGGUacuucccgagccGGAUCGGCa -3'
miRNA:   3'- -UAGUCgG--UGGUCCGCCCG------------UCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 16599 0.69 0.160785
Target:  5'- -cCGGUCcuugaggucgaagACCAGGCGGG-GGGCgCGGCg -3'
miRNA:   3'- uaGUCGG-------------UGGUCCGCCCgUCUG-GCCG- -5'
23031 5' -62.5 NC_005178.1 + 16662 0.69 0.143368
Target:  5'- -cCAGCCAau-GGCGaGGCgguccugggcgaucAGGCCGGCg -3'
miRNA:   3'- uaGUCGGUgguCCGC-CCG--------------UCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 16881 0.71 0.107733
Target:  5'- uAUCGGCCugguuuugcaugucCUGGGCcGGCAGGCUGGCc -3'
miRNA:   3'- -UAGUCGGu-------------GGUCCGcCCGUCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 17632 0.67 0.216263
Target:  5'- -aCGGUCGaguCCAGcGCcGGCaAGACCGGCc -3'
miRNA:   3'- uaGUCGGU---GGUC-CGcCCG-UCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 17708 0.67 0.216263
Target:  5'- -aCGGUCACCuGGCcGGUcuuGCCGGCg -3'
miRNA:   3'- uaGUCGGUGGuCCGcCCGuc-UGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 18166 0.74 0.063892
Target:  5'- -aCAG-CACCAuGGCGGGCuGGGCCaGGCg -3'
miRNA:   3'- uaGUCgGUGGU-CCGCCCG-UCUGG-CCG- -5'
23031 5' -62.5 NC_005178.1 + 20084 0.71 0.106531
Target:  5'- -aCGGCCGgCAG-CGGGCgcGGGCUGGCc -3'
miRNA:   3'- uaGUCGGUgGUCcGCCCG--UCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 20469 0.71 0.100713
Target:  5'- -gCAGCUugGCCAGGUuggucgccuGGGCguccaGGGCCGGCu -3'
miRNA:   3'- uaGUCGG--UGGUCCG---------CCCG-----UCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 20997 0.67 0.210104
Target:  5'- ---cGCUACCGGGUucgccguGGGCGGcagcaccgccACCGGCc -3'
miRNA:   3'- uaguCGGUGGUCCG-------CCCGUC----------UGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 21097 0.7 0.119128
Target:  5'- cUCAGCgCGgcCCAGGUaGGuCAGGCCGGUg -3'
miRNA:   3'- uAGUCG-GU--GGUCCGcCC-GUCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 22335 0.76 0.046518
Target:  5'- cAUCGcccGCCGCCuGGCGGGCcAGcCUGGCg -3'
miRNA:   3'- -UAGU---CGGUGGuCCGCCCG-UCuGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 23540 0.67 0.216263
Target:  5'- -gCAGCCgGCCGaGCa-GCGGGCCGGCu -3'
miRNA:   3'- uaGUCGG-UGGUcCGccCGUCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 23606 0.66 0.239969
Target:  5'- --aAGCCugCGGGCu-GCGGGCCaGCg -3'
miRNA:   3'- uagUCGGugGUCCGccCGUCUGGcCG- -5'
23031 5' -62.5 NC_005178.1 + 24120 0.66 0.239969
Target:  5'- gGUC-GUgACCAaggcGGCGGGCuccguGACgGGCg -3'
miRNA:   3'- -UAGuCGgUGGU----CCGCCCGu----CUGgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.