miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23032 3' -57.3 NC_005178.1 + 32921 0.66 0.524299
Target:  5'- gCGUGGUCgccGGcaugccgauGGCUGGuUUACCGGGg -3'
miRNA:   3'- aGCACCGGa--CC---------UUGACCcAGUGGUCC- -5'
23032 3' -57.3 NC_005178.1 + 22687 0.66 0.482339
Target:  5'- cUCGcccaGGCC--GAGCUGGaUCGCCGGGu -3'
miRNA:   3'- -AGCa---CCGGacCUUGACCcAGUGGUCC- -5'
23032 3' -57.3 NC_005178.1 + 12924 0.67 0.4721
Target:  5'- -gGUGGgCUGGAggACgUGGcG-CGCCAGGu -3'
miRNA:   3'- agCACCgGACCU--UG-ACC-CaGUGGUCC- -5'
23032 3' -57.3 NC_005178.1 + 30674 0.67 0.442069
Target:  5'- -gGUGGCgguuccgcgCUGGAGCagcGGGUacacgCGCCAGGu -3'
miRNA:   3'- agCACCG---------GACCUUGa--CCCA-----GUGGUCC- -5'
23032 3' -57.3 NC_005178.1 + 31800 0.68 0.385424
Target:  5'- cUCG-GGCCaGGcGCUGGGcuccaUUAUCAGGa -3'
miRNA:   3'- -AGCaCCGGaCCuUGACCC-----AGUGGUCC- -5'
23032 3' -57.3 NC_005178.1 + 27878 0.69 0.333789
Target:  5'- ---aGGCCgcccagGGcAACUGGGUCAaCGGGg -3'
miRNA:   3'- agcaCCGGa-----CC-UUGACCCAGUgGUCC- -5'
23032 3' -57.3 NC_005178.1 + 29032 0.69 0.325692
Target:  5'- ---aGGCCaGGGGCgcgcaGGGUCACCuGGc -3'
miRNA:   3'- agcaCCGGaCCUUGa----CCCAGUGGuCC- -5'
23032 3' -57.3 NC_005178.1 + 20609 0.69 0.325692
Target:  5'- --cUGGcCCUGGAGCUGGGUgACagcuucaaCGGGc -3'
miRNA:   3'- agcACC-GGACCUUGACCCAgUG--------GUCC- -5'
23032 3' -57.3 NC_005178.1 + 31665 0.72 0.204538
Target:  5'- -gGUGGCCUGG-ACgGGGcggACCAGGu -3'
miRNA:   3'- agCACCGGACCuUGaCCCag-UGGUCC- -5'
23032 3' -57.3 NC_005178.1 + 18068 0.74 0.164498
Target:  5'- aCGccaGCCUGGAGCUGGG-CACCcuGGGc -3'
miRNA:   3'- aGCac-CGGACCUUGACCCaGUGG--UCC- -5'
23032 3' -57.3 NC_005178.1 + 13024 1.1 0.000347
Target:  5'- aUCGUGGCCUGGAACUGGGUCACCAGGc -3'
miRNA:   3'- -AGCACCGGACCUUGACCCAGUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.