miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23032 5' -61.6 NC_005178.1 + 20399 0.66 0.314348
Target:  5'- uGCCUcGGuCGUGCCu--UCUUCCAGCg -3'
miRNA:   3'- gUGGA-CC-GCGCGGugcAGGAGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 13127 0.66 0.322051
Target:  5'- gCGCUUGGaCGCGCUgacCGUCUUguuguaggcaUCGGCCa -3'
miRNA:   3'- -GUGGACC-GCGCGGu--GCAGGA----------GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 10958 0.66 0.317412
Target:  5'- uCAUCUGGCGauaCGCCuugaccuucgcgaagGCGUCCUCgAcgugcGCCc -3'
miRNA:   3'- -GUGGACCGC---GCGG---------------UGCAGGAGgU-----CGG- -5'
23032 5' -61.6 NC_005178.1 + 30488 0.66 0.306786
Target:  5'- aGCUcguUGGCGC-UCGCGUCgaUCAGCCc -3'
miRNA:   3'- gUGG---ACCGCGcGGUGCAGgaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 18080 0.66 0.314348
Target:  5'- gCAgCUGGCGaaccuGCCGCagcgCCUggcCCAGCCc -3'
miRNA:   3'- -GUgGACCGCg----CGGUGca--GGA---GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 33907 0.66 0.306786
Target:  5'- gCGCCUGGCGgcgaUGCUcgGCGgCCggugCCGGCUu -3'
miRNA:   3'- -GUGGACCGC----GCGG--UGCaGGa---GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 16339 0.66 0.306786
Target:  5'- -uCCUGG-GCGgCACGcUCa-CCAGCCa -3'
miRNA:   3'- guGGACCgCGCgGUGC-AGgaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 22345 0.66 0.299364
Target:  5'- gACCUuccGGCGUGCUggcuucGCGUUCaCCAGCg -3'
miRNA:   3'- gUGGA---CCGCGCGG------UGCAGGaGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 10636 0.66 0.292082
Target:  5'- aGCC-GGgGCGCaACG-CC-CCGGCCg -3'
miRNA:   3'- gUGGaCCgCGCGgUGCaGGaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 26260 0.66 0.322051
Target:  5'- aCGCCaGaGCcaGCGCCACGcCCgcagCGGCCa -3'
miRNA:   3'- -GUGGaC-CG--CGCGGUGCaGGag--GUCGG- -5'
23032 5' -61.6 NC_005178.1 + 7223 0.66 0.314348
Target:  5'- gACa-GGCGCGgCACGcUUUCCAGCa -3'
miRNA:   3'- gUGgaCCGCGCgGUGCaGGAGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 5489 0.66 0.306786
Target:  5'- cCGCgUGGCGCGCCGC----UCCAaCCa -3'
miRNA:   3'- -GUGgACCGCGCGGUGcaggAGGUcGG- -5'
23032 5' -61.6 NC_005178.1 + 2906 0.67 0.264338
Target:  5'- gACaUGGCGCGCCuCGgCCaggUCgAGCCg -3'
miRNA:   3'- gUGgACCGCGCGGuGCaGG---AGgUCGG- -5'
23032 5' -61.6 NC_005178.1 + 22791 0.67 0.244962
Target:  5'- gACCUGGUcgagcaguacgGCGagGCGUCCauccgCCAGCUg -3'
miRNA:   3'- gUGGACCG-----------CGCggUGCAGGa----GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 14843 0.67 0.243091
Target:  5'- cCGCCUGGCGCaauggauguucuacgGCgCGugugaccCGUCCcuuggcaagcaaggcUCCAGCCg -3'
miRNA:   3'- -GUGGACCGCG---------------CG-GU-------GCAGG---------------AGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 22326 0.67 0.244962
Target:  5'- cCGCCUGGCGgGCCAg--CCUggcggUCGGCUu -3'
miRNA:   3'- -GUGGACCGCgCGGUgcaGGA-----GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 7737 0.67 0.251287
Target:  5'- gACCUGaagaaGCGCCugGcggUCCUCCAGg- -3'
miRNA:   3'- gUGGACcg---CGCGGugC---AGGAGGUCgg -5'
23032 5' -61.6 NC_005178.1 + 25927 0.67 0.251287
Target:  5'- aGCCUGGCcaGCgggauGCCACGUggaugguugCCaUCCAGCa -3'
miRNA:   3'- gUGGACCG--CG-----CGGUGCA---------GG-AGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 27497 0.67 0.257745
Target:  5'- cCGCCgUGGUggaacuuuugucGCGCaGCG-CCUCCAGCg -3'
miRNA:   3'- -GUGG-ACCG------------CGCGgUGCaGGAGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 18733 0.67 0.255793
Target:  5'- gACCgggagguacgGGCGCGCCgggauagucaccuuACGgCCUcgcCCAGCCu -3'
miRNA:   3'- gUGGa---------CCGCGCGG--------------UGCaGGA---GGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.