miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23032 5' -61.6 NC_005178.1 + 12990 1.09 0.000135
Target:  5'- gCACCUGGCGCGCCACGUCCUCCAGCCc -3'
miRNA:   3'- -GUGGACCGCGCGGUGCAGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 35229 0.84 0.013377
Target:  5'- gGCCUGGcCGacaGUgACGUCCUCCAGCCg -3'
miRNA:   3'- gUGGACC-GCg--CGgUGCAGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 12936 0.78 0.040468
Target:  5'- gACgUGGCGCGCCAgGUgCUggCCGGCCu -3'
miRNA:   3'- gUGgACCGCGCGGUgCAgGA--GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 16845 0.78 0.041654
Target:  5'- aGCCUGGuCGCGCCGC-UCCUggaugugaUCAGCCg -3'
miRNA:   3'- gUGGACC-GCGCGGUGcAGGA--------GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 30595 0.75 0.062275
Target:  5'- aCACCUGGCGCGuguacCCGC-UgCUCCAGCg -3'
miRNA:   3'- -GUGGACCGCGC-----GGUGcAgGAGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 4132 0.74 0.080428
Target:  5'- cCACCUGGU-CGCCGUGgaauUCCUCCAGCUc -3'
miRNA:   3'- -GUGGACCGcGCGGUGC----AGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 24499 0.73 0.095234
Target:  5'- gACC-GGCGCGCCg---CCUUCGGCCa -3'
miRNA:   3'- gUGGaCCGCGCGGugcaGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 6880 0.73 0.103573
Target:  5'- gGCCUGGgGCGa-GCGUCCgcccgucuucgUCCAGCUg -3'
miRNA:   3'- gUGGACCgCGCggUGCAGG-----------AGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 10397 0.72 0.10951
Target:  5'- aGCCcGGCGCGCUuCGccCCUCCGcGCCc -3'
miRNA:   3'- gUGGaCCGCGCGGuGCa-GGAGGU-CGG- -5'
23032 5' -61.6 NC_005178.1 + 21974 0.72 0.119014
Target:  5'- gGgUUGGUGagcagcaucuuCGCCACGUCUUCCAGCg -3'
miRNA:   3'- gUgGACCGC-----------GCGGUGCAGGAGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 18672 0.71 0.124736
Target:  5'- -uCCcGGCGCGCC-CGUaCCUCCcgguccucagaaacGGCCa -3'
miRNA:   3'- guGGaCCGCGCGGuGCA-GGAGG--------------UCGG- -5'
23032 5' -61.6 NC_005178.1 + 12868 0.71 0.129282
Target:  5'- aCGCCgaacaUGGCG-GCCGCGaCCUCCAgggacuGCCg -3'
miRNA:   3'- -GUGG-----ACCGCgCGGUGCaGGAGGU------CGG- -5'
23032 5' -61.6 NC_005178.1 + 2960 0.71 0.129282
Target:  5'- gGCCgaGGCGCGCCAUGUCC---AGCa -3'
miRNA:   3'- gUGGa-CCGCGCGGUGCAGGaggUCGg -5'
23032 5' -61.6 NC_005178.1 + 19887 0.71 0.132883
Target:  5'- -uCCaGGCGCuGCC--GUCCUCCAGCUu -3'
miRNA:   3'- guGGaCCGCG-CGGugCAGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 12769 0.71 0.136576
Target:  5'- -cCCUGcGcCGCGCCuACGUCCUcgaCCGGCa -3'
miRNA:   3'- guGGAC-C-GCGCGG-UGCAGGA---GGUCGg -5'
23032 5' -61.6 NC_005178.1 + 18581 0.71 0.140363
Target:  5'- gACCUGgagaaucggguGCGCGCCGCGccCCUUC-GCCg -3'
miRNA:   3'- gUGGAC-----------CGCGCGGUGCa-GGAGGuCGG- -5'
23032 5' -61.6 NC_005178.1 + 9040 0.7 0.156491
Target:  5'- gACCUGGagcaaugcCGCGCCGCGcUCgCggucaCCGGCCu -3'
miRNA:   3'- gUGGACC--------GCGCGGUGC-AG-Ga----GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 27059 0.7 0.156491
Target:  5'- uCugCUGGcCGCguauuGCCuCGUCCUCCAGgUa -3'
miRNA:   3'- -GugGACC-GCG-----CGGuGCAGGAGGUCgG- -5'
23032 5' -61.6 NC_005178.1 + 4306 0.7 0.160344
Target:  5'- -cCCUGGaaauggaUGCGCCGCuGUCCauccCCGGCCu -3'
miRNA:   3'- guGGACC-------GCGCGGUG-CAGGa---GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 16410 0.7 0.169669
Target:  5'- aACgaGGUGCGCCAUGaCCUaCUGGCUg -3'
miRNA:   3'- gUGgaCCGCGCGGUGCaGGA-GGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.