miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23032 5' -61.6 NC_005178.1 + 1700 0.67 0.277934
Target:  5'- uGCgUGGCG-GCCGCGUggCUuaCGGCCg -3'
miRNA:   3'- gUGgACCGCgCGGUGCA--GGagGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 1755 0.67 0.264338
Target:  5'- aGCCacgcGGC-CGCCACGcacaUCgaCCAGCCa -3'
miRNA:   3'- gUGGa---CCGcGCGGUGC----AGgaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 2906 0.67 0.264338
Target:  5'- gACaUGGCGCGCCuCGgCCaggUCgAGCCg -3'
miRNA:   3'- gUGgACCGCGCGGuGCaGG---AGgUCGG- -5'
23032 5' -61.6 NC_005178.1 + 2960 0.71 0.129282
Target:  5'- gGCCgaGGCGCGCCAUGUCC---AGCa -3'
miRNA:   3'- gUGGa-CCGCGCGGUGCAGGaggUCGg -5'
23032 5' -61.6 NC_005178.1 + 3092 0.67 0.244962
Target:  5'- gCACCagGGCGCcacgcucgGCCugGUCCaggaagcgcUCCAGgCu -3'
miRNA:   3'- -GUGGa-CCGCG--------CGGugCAGG---------AGGUCgG- -5'
23032 5' -61.6 NC_005178.1 + 3193 0.67 0.263673
Target:  5'- uGCaugGGCagcgcggGCGCUGCGcUUCUCCGGCCc -3'
miRNA:   3'- gUGga-CCG-------CGCGGUGC-AGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 4132 0.74 0.080428
Target:  5'- cCACCUGGU-CGCCGUGgaauUCCUCCAGCUc -3'
miRNA:   3'- -GUGGACCGcGCGGUGC----AGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 4306 0.7 0.160344
Target:  5'- -cCCUGGaaauggaUGCGCCGCuGUCCauccCCGGCCu -3'
miRNA:   3'- guGGACC-------GCGCGGUG-CAGGa---GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 4707 0.67 0.257745
Target:  5'- -cCCUGGagaaaGCGCUgucGCGUaCCUCCAcguuGCCc -3'
miRNA:   3'- guGGACCg----CGCGG---UGCA-GGAGGU----CGG- -5'
23032 5' -61.6 NC_005178.1 + 4794 0.68 0.229137
Target:  5'- cCGCCUGGaucgccaaucgccgcCGCGCCuacuACGUCCa--GGCCa -3'
miRNA:   3'- -GUGGACC---------------GCGCGG----UGCAGGaggUCGG- -5'
23032 5' -61.6 NC_005178.1 + 5489 0.66 0.306786
Target:  5'- cCGCgUGGCGCGCCGC----UCCAaCCa -3'
miRNA:   3'- -GUGgACCGCGCGGUGcaggAGGUcGG- -5'
23032 5' -61.6 NC_005178.1 + 6880 0.73 0.103573
Target:  5'- gGCCUGGgGCGa-GCGUCCgcccgucuucgUCCAGCUg -3'
miRNA:   3'- gUGGACCgCGCggUGCAGG-----------AGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 7223 0.66 0.314348
Target:  5'- gACa-GGCGCGgCACGcUUUCCAGCa -3'
miRNA:   3'- gUGgaCCGCGCgGUGCaGGAGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 7737 0.67 0.251287
Target:  5'- gACCUGaagaaGCGCCugGcggUCCUCCAGg- -3'
miRNA:   3'- gUGGACcg---CGCGGugC---AGGAGGUCgg -5'
23032 5' -61.6 NC_005178.1 + 9040 0.7 0.156491
Target:  5'- gACCUGGagcaaugcCGCGCCGCGcUCgCggucaCCGGCCu -3'
miRNA:   3'- gUGGACC--------GCGCGGUGC-AG-Ga----GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 9967 0.68 0.226781
Target:  5'- aAUCUGGCGCgGCCcuaaGUCCU-UGGCCg -3'
miRNA:   3'- gUGGACCGCG-CGGug--CAGGAgGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 10397 0.72 0.10951
Target:  5'- aGCCcGGCGCGCUuCGccCCUCCGcGCCc -3'
miRNA:   3'- gUGGaCCGCGCGGuGCa-GGAGGU-CGG- -5'
23032 5' -61.6 NC_005178.1 + 10636 0.66 0.292082
Target:  5'- aGCC-GGgGCGCaACG-CC-CCGGCCg -3'
miRNA:   3'- gUGGaCCgCGCGgUGCaGGaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 10942 0.68 0.238771
Target:  5'- gAUCcGGCGCgGCC-CG-CCUCCuGCCc -3'
miRNA:   3'- gUGGaCCGCG-CGGuGCaGGAGGuCGG- -5'
23032 5' -61.6 NC_005178.1 + 10958 0.66 0.317412
Target:  5'- uCAUCUGGCGauaCGCCuugaccuucgcgaagGCGUCCUCgAcgugcGCCc -3'
miRNA:   3'- -GUGGACCGC---GCGG---------------UGCAGGAGgU-----CGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.