Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23032 | 5' | -61.6 | NC_005178.1 | + | 28848 | 0.67 | 0.244962 |
Target: 5'- aACCUGGUcgaGCGCCuCGUCCaguUCCucaCCg -3' miRNA: 3'- gUGGACCG---CGCGGuGCAGG---AGGuc-GG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 12666 | 0.68 | 0.204329 |
Target: 5'- gCGCgCUGGCGggugGCCugGUugCCUgCGGCCu -3' miRNA: 3'- -GUG-GACCGCg---CGGugCA--GGAgGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 16719 | 0.68 | 0.204329 |
Target: 5'- aGCC-GGCGC-CCugGUCCUCgCAucGCUg -3' miRNA: 3'- gUGGaCCGCGcGGugCAGGAG-GU--CGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 37103 | 0.68 | 0.209755 |
Target: 5'- gACCUGGCGUuCCaucccgACGaCCUCCucGCCg -3' miRNA: 3'- gUGGACCGCGcGG------UGCaGGAGGu-CGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 11154 | 0.68 | 0.226195 |
Target: 5'- -cCCUGGC-CGCCGCccugggcuuccugGUCCUgUGGCCc -3' miRNA: 3'- guGGACCGcGCGGUG-------------CAGGAgGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 4794 | 0.68 | 0.229137 |
Target: 5'- cCGCCUGGaucgccaaucgccgcCGCGCCuacuACGUCCa--GGCCa -3' miRNA: 3'- -GUGGACC---------------GCGCGG----UGCAGGaggUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 10942 | 0.68 | 0.238771 |
Target: 5'- gAUCcGGCGCgGCC-CG-CCUCCuGCCc -3' miRNA: 3'- gUGGaCCGCG-CGGuGCaGGAGGuCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 14843 | 0.67 | 0.243091 |
Target: 5'- cCGCCUGGCGCaauggauguucuacgGCgCGugugaccCGUCCcuuggcaagcaaggcUCCAGCCg -3' miRNA: 3'- -GUGGACCGCG---------------CG-GU-------GCAGG---------------AGGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 22791 | 0.67 | 0.244962 |
Target: 5'- gACCUGGUcgagcaguacgGCGagGCGUCCauccgCCAGCUg -3' miRNA: 3'- gUGGACCG-----------CGCggUGCAGGa----GGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 30790 | 0.69 | 0.188778 |
Target: 5'- cCGCCUGGCaGCgGUCGCGgCCUCgaccugGGCCg -3' miRNA: 3'- -GUGGACCG-CG-CGGUGCaGGAGg-----UCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 12032 | 0.69 | 0.18383 |
Target: 5'- gACCUGGCGCcucgGCUugG-CC-CUGGCCc -3' miRNA: 3'- gUGGACCGCG----CGGugCaGGaGGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 31603 | 0.69 | 0.174277 |
Target: 5'- gACCUGGUcCGCCcCGUCCa--GGCCa -3' miRNA: 3'- gUGGACCGcGCGGuGCAGGaggUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 16845 | 0.78 | 0.041654 |
Target: 5'- aGCCUGGuCGCGCCGC-UCCUggaugugaUCAGCCg -3' miRNA: 3'- gUGGACC-GCGCGGUGcAGGA--------GGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 30595 | 0.75 | 0.062275 |
Target: 5'- aCACCUGGCGCGuguacCCGC-UgCUCCAGCg -3' miRNA: 3'- -GUGGACCGCGC-----GGUGcAgGAGGUCGg -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 6880 | 0.73 | 0.103573 |
Target: 5'- gGCCUGGgGCGa-GCGUCCgcccgucuucgUCCAGCUg -3' miRNA: 3'- gUGGACCgCGCggUGCAGG-----------AGGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 18672 | 0.71 | 0.124736 |
Target: 5'- -uCCcGGCGCGCC-CGUaCCUCCcgguccucagaaacGGCCa -3' miRNA: 3'- guGGaCCGCGCGGuGCA-GGAGG--------------UCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 12769 | 0.71 | 0.136576 |
Target: 5'- -cCCUGcGcCGCGCCuACGUCCUcgaCCGGCa -3' miRNA: 3'- guGGAC-C-GCGCGG-UGCAGGA---GGUCGg -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 9040 | 0.7 | 0.156491 |
Target: 5'- gACCUGGagcaaugcCGCGCCGCGcUCgCggucaCCGGCCu -3' miRNA: 3'- gUGGACC--------GCGCGGUGC-AG-Ga----GGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 4306 | 0.7 | 0.160344 |
Target: 5'- -cCCUGGaaauggaUGCGCCGCuGUCCauccCCGGCCu -3' miRNA: 3'- guGGACC-------GCGCGGUG-CAGGa---GGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 16410 | 0.7 | 0.169669 |
Target: 5'- aACgaGGUGCGCCAUGaCCUaCUGGCUg -3' miRNA: 3'- gUGgaCCGCGCGGUGCaGGA-GGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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