Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 23032 | 5' | -61.6 | NC_005178.1 | + | 6880 | 0.73 | 0.103573 |
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Target: 5'- gGCCUGGgGCGa-GCGUCCgcccgucuucgUCCAGCUg -3' miRNA: 3'- gUGGACCgCGCggUGCAGG-----------AGGUCGG- -5' |
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| 23032 | 5' | -61.6 | NC_005178.1 | + | 24499 | 0.73 | 0.095234 |
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Target: 5'- gACC-GGCGCGCCg---CCUUCGGCCa -3' miRNA: 3'- gUGGaCCGCGCGGugcaGGAGGUCGG- -5' |
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| 23032 | 5' | -61.6 | NC_005178.1 | + | 4132 | 0.74 | 0.080428 |
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Target: 5'- cCACCUGGU-CGCCGUGgaauUCCUCCAGCUc -3' miRNA: 3'- -GUGGACCGcGCGGUGC----AGGAGGUCGG- -5' |
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| 23032 | 5' | -61.6 | NC_005178.1 | + | 30595 | 0.75 | 0.062275 |
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Target: 5'- aCACCUGGCGCGuguacCCGC-UgCUCCAGCg -3' miRNA: 3'- -GUGGACCGCGC-----GGUGcAgGAGGUCGg -5' |
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| 23032 | 5' | -61.6 | NC_005178.1 | + | 16845 | 0.78 | 0.041654 |
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Target: 5'- aGCCUGGuCGCGCCGC-UCCUggaugugaUCAGCCg -3' miRNA: 3'- gUGGACC-GCGCGGUGcAGGA--------GGUCGG- -5' |
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| 23032 | 5' | -61.6 | NC_005178.1 | + | 12936 | 0.78 | 0.040468 |
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Target: 5'- gACgUGGCGCGCCAgGUgCUggCCGGCCu -3' miRNA: 3'- gUGgACCGCGCGGUgCAgGA--GGUCGG- -5' |
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| 23032 | 5' | -61.6 | NC_005178.1 | + | 35229 | 0.84 | 0.013377 |
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Target: 5'- gGCCUGGcCGacaGUgACGUCCUCCAGCCg -3' miRNA: 3'- gUGGACC-GCg--CGgUGCAGGAGGUCGG- -5' |
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| 23032 | 5' | -61.6 | NC_005178.1 | + | 12990 | 1.09 | 0.000135 |
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Target: 5'- gCACCUGGCGCGCCACGUCCUCCAGCCc -3' miRNA: 3'- -GUGGACCGCGCGGUGCAGGAGGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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