miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23033 3' -56.1 NC_005178.1 + 13641 1.07 0.000622
Target:  5'- cAACUGAACAGCGCCCACGCGGAUCAGa -3'
miRNA:   3'- -UUGACUUGUCGCGGGUGCGCCUAGUC- -5'
23033 3' -56.1 NC_005178.1 + 16934 0.76 0.127935
Target:  5'- gGAC--GACAGCGCCCugGCGGAUg-- -3'
miRNA:   3'- -UUGacUUGUCGCGGGugCGCCUAguc -5'
23033 3' -56.1 NC_005178.1 + 28668 0.74 0.174625
Target:  5'- -uCUGAGCGGCGCCCAUGCuugggcgugguagGGAUggCGGg -3'
miRNA:   3'- uuGACUUGUCGCGGGUGCG-------------CCUA--GUC- -5'
23033 3' -56.1 NC_005178.1 + 11768 0.73 0.190448
Target:  5'- -gUUGGACGGCGCCCA-GCGagcGAUCAGc -3'
miRNA:   3'- uuGACUUGUCGCGGGUgCGC---CUAGUC- -5'
23033 3' -56.1 NC_005178.1 + 30816 0.72 0.21862
Target:  5'- -cCUGGGcCGGCGUCUACGCGGcgcAUCAGc -3'
miRNA:   3'- uuGACUU-GUCGCGGGUGCGCC---UAGUC- -5'
23033 3' -56.1 NC_005178.1 + 3995 0.72 0.246286
Target:  5'- gGGCUGAaacccuccgcuucguGCAGCGCCCAgGCuucguuggGGGUCAu -3'
miRNA:   3'- -UUGACU---------------UGUCGCGGGUgCG--------CCUAGUc -5'
23033 3' -56.1 NC_005178.1 + 5544 0.72 0.224665
Target:  5'- ---gGAGCGGCGCgCCACGCGGuagaCGGu -3'
miRNA:   3'- uugaCUUGUCGCG-GGUGCGCCua--GUC- -5'
23033 3' -56.1 NC_005178.1 + 20600 0.72 0.218023
Target:  5'- gAGCUGggUgacagcuucaacgGGCGCCCACuucgcCGGGUCGGg -3'
miRNA:   3'- -UUGACuuG-------------UCGCGGGUGc----GCCUAGUC- -5'
23033 3' -56.1 NC_005178.1 + 19096 0.72 0.212714
Target:  5'- uACUGAGUAGUGCCCGacUGGAUCAGg -3'
miRNA:   3'- uUGACUUGUCGCGGGUgcGCCUAGUC- -5'
23033 3' -56.1 NC_005178.1 + 13776 0.7 0.308657
Target:  5'- gGACUGGAUugcuGGUGCCUACGgCGGcAUCAa -3'
miRNA:   3'- -UUGACUUG----UCGCGGGUGC-GCC-UAGUc -5'
23033 3' -56.1 NC_005178.1 + 25460 0.69 0.358017
Target:  5'- cGCUGGAC-GCGCUgGCGgaaaguuCGGAUCGGa -3'
miRNA:   3'- uUGACUUGuCGCGGgUGC-------GCCUAGUC- -5'
23033 3' -56.1 NC_005178.1 + 16376 0.68 0.414591
Target:  5'- gGGCg--GCGGCGCCUACGCccuGGggCAGg -3'
miRNA:   3'- -UUGacuUGUCGCGGGUGCG---CCuaGUC- -5'
23033 3' -56.1 NC_005178.1 + 35750 0.68 0.386083
Target:  5'- -cCUGcGCAGUGUCCGCGaCGGcAUCAa -3'
miRNA:   3'- uuGACuUGUCGCGGGUGC-GCC-UAGUc -5'
23033 3' -56.1 NC_005178.1 + 7882 0.68 0.386083
Target:  5'- uGACUGugcGCGGCGCCgAUGCGG-UCc- -3'
miRNA:   3'- -UUGACu--UGUCGCGGgUGCGCCuAGuc -5'
23033 3' -56.1 NC_005178.1 + 29477 0.68 0.403988
Target:  5'- aAACcGAGcCAGCGCCCGgcgggauCGCGGAgauagCAGc -3'
miRNA:   3'- -UUGaCUU-GUCGCGGGU-------GCGCCUa----GUC- -5'
23033 3' -56.1 NC_005178.1 + 13934 0.68 0.414591
Target:  5'- cGCcGGGCGGCGCUgGCcuuCGGGUCGGg -3'
miRNA:   3'- uUGaCUUGUCGCGGgUGc--GCCUAGUC- -5'
23033 3' -56.1 NC_005178.1 + 13527 0.67 0.474233
Target:  5'- gAACUGAGCaauuucggcuuccAGCucGCCUAUgcgGCGGGUCAGc -3'
miRNA:   3'- -UUGACUUG-------------UCG--CGGGUG---CGCCUAGUC- -5'
23033 3' -56.1 NC_005178.1 + 16896 0.67 0.444355
Target:  5'- gAGCUGcuCGGCGCCCugGCcGAggCAu -3'
miRNA:   3'- -UUGACuuGUCGCGGGugCGcCUa-GUc -5'
23033 3' -56.1 NC_005178.1 + 20795 0.67 0.434299
Target:  5'- cAGCUGGACgaGGcCGCCCuCGCGGuuugcUCGGc -3'
miRNA:   3'- -UUGACUUG--UC-GCGGGuGCGCCu----AGUC- -5'
23033 3' -56.1 NC_005178.1 + 10724 0.67 0.444355
Target:  5'- cGGCUGAGaCAGgGUCgGCGCGGAg--- -3'
miRNA:   3'- -UUGACUU-GUCgCGGgUGCGCCUaguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.