miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23033 5' -58.7 NC_005178.1 + 13606 1.1 0.000211
Target:  5'- gACCCGCCGCAUAGGCGAGCUGGAAGCc -3'
miRNA:   3'- -UGGGCGGCGUAUCCGCUCGACCUUCG- -5'
23033 5' -58.7 NC_005178.1 + 16512 0.68 0.311692
Target:  5'- -aUCGCgacucaGCGUGgcGGCGAGCUGGcGGGCa -3'
miRNA:   3'- ugGGCGg-----CGUAU--CCGCUCGACC-UUCG- -5'
23033 5' -58.7 NC_005178.1 + 27936 0.68 0.281729
Target:  5'- gACCCaGuuGCccUGGGCGGcCUGGAGGUc -3'
miRNA:   3'- -UGGG-CggCGu-AUCCGCUcGACCUUCG- -5'
23033 5' -58.7 NC_005178.1 + 25147 0.69 0.26079
Target:  5'- cGCUCGgUGUAgcGGcCGAGCUGGucGCg -3'
miRNA:   3'- -UGGGCgGCGUauCC-GCUCGACCuuCG- -5'
23033 5' -58.7 NC_005178.1 + 18178 0.69 0.247546
Target:  5'- uGCCaCGCUcccacaGCAccauGGCGGGCUGGGccaGGCg -3'
miRNA:   3'- -UGG-GCGG------CGUau--CCGCUCGACCU---UCG- -5'
23033 5' -58.7 NC_005178.1 + 20647 0.7 0.222732
Target:  5'- cACUCGCCGCcguugAGGCGAGa-GGucAGCg -3'
miRNA:   3'- -UGGGCGGCGua---UCCGCUCgaCCu-UCG- -5'
23033 5' -58.7 NC_005178.1 + 20222 0.67 0.369794
Target:  5'- gACCgUGCCGuCcgGGGCGuAGCUGaagacGggGCu -3'
miRNA:   3'- -UGG-GCGGC-GuaUCCGC-UCGAC-----CuuCG- -5'
23033 5' -58.7 NC_005178.1 + 24813 0.68 0.296416
Target:  5'- gGCCUugaggGCCGCGUgguGGGUGAGCUGcucuucGAAGg -3'
miRNA:   3'- -UGGG-----CGGCGUA---UCCGCUCGAC------CUUCg -5'
23033 5' -58.7 NC_005178.1 + 16443 0.69 0.256757
Target:  5'- gACCUGCCccaggGCGUAGGCGccgccgcccgacucGCUGGucuGGCu -3'
miRNA:   3'- -UGGGCGG-----CGUAUCCGCu-------------CGACCu--UCG- -5'
23033 5' -58.7 NC_005178.1 + 19423 0.71 0.200067
Target:  5'- aGCCCG-CGCAggUAGcGCGGGUcuggauugugguUGGAGGCg -3'
miRNA:   3'- -UGGGCgGCGU--AUC-CGCUCG------------ACCUUCG- -5'
23033 5' -58.7 NC_005178.1 + 22332 0.74 0.108334
Target:  5'- cGCCCGCCGCcu-GGCGGGCcagccUGGcGGUc -3'
miRNA:   3'- -UGGGCGGCGuauCCGCUCG-----ACCuUCG- -5'
23033 5' -58.7 NC_005178.1 + 4340 0.66 0.393184
Target:  5'- uACCCGCCGUcacgcucggcgcgaAUcucgucgAGGUGAGCcaGGgcGCg -3'
miRNA:   3'- -UGGGCGGCG--------------UA-------UCCGCUCGa-CCuuCG- -5'
23033 5' -58.7 NC_005178.1 + 7484 0.74 0.111472
Target:  5'- -gCUGCCgGCcgAGGCGucgcGCUGGAAGCc -3'
miRNA:   3'- ugGGCGG-CGuaUCCGCu---CGACCUUCG- -5'
23033 5' -58.7 NC_005178.1 + 25798 0.68 0.289
Target:  5'- gACCCcugGCaGCAUucAGGCGcGcCUGGAGGCu -3'
miRNA:   3'- -UGGG---CGgCGUA--UCCGCuC-GACCUUCG- -5'
23033 5' -58.7 NC_005178.1 + 23746 0.66 0.415608
Target:  5'- gGCuuGCCgGCAUGGGUGuGaUUGGGuuucucGGCg -3'
miRNA:   3'- -UGggCGG-CGUAUCCGCuC-GACCU------UCG- -5'
23033 5' -58.7 NC_005178.1 + 19883 0.67 0.334069
Target:  5'- gGCgCUGCCGUccuccagcuuGGgGAGCUGGAaagAGCa -3'
miRNA:   3'- -UG-GGCGGCGuau-------CCgCUCGACCU---UCG- -5'
23033 5' -58.7 NC_005178.1 + 7146 0.68 0.319551
Target:  5'- cCCCGUCGCGau-GCGcuGCUGGaAAGCg -3'
miRNA:   3'- uGGGCGGCGUaucCGCu-CGACC-UUCG- -5'
23033 5' -58.7 NC_005178.1 + 2730 0.68 0.30398
Target:  5'- --aCGCCGCccUGGGCGAGgUGGccaccaAGGCg -3'
miRNA:   3'- uggGCGGCGu-AUCCGCUCgACC------UUCG- -5'
23033 5' -58.7 NC_005178.1 + 5540 0.68 0.289
Target:  5'- cGCCUGCCuGCGccUGGGCG-GCUacgucGAGGCg -3'
miRNA:   3'- -UGGGCGG-CGU--AUCCGCuCGAc----CUUCG- -5'
23033 5' -58.7 NC_005178.1 + 23482 0.68 0.281729
Target:  5'- gGCCCGCUGCuc-GGCcGGCUGcucaAGGCa -3'
miRNA:   3'- -UGGGCGGCGuauCCGcUCGACc---UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.