Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23034 | 3' | -58.1 | NC_005178.1 | + | 25729 | 0.7 | 0.27027 |
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Target: 5'- uGGCCgcGAGCaGUUUgC-CCAGCUCGGccUGCu -3' miRNA: 3'- -CCGG--CUCG-CGAA-GuGGUCGAGCC--ACG- -5' |
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| 23034 | 3' | -58.1 | NC_005178.1 | + | 37236 | 0.7 | 0.27727 |
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Target: 5'- cGGCCuccaGGCGCagCGggUCGGaCUCGGUGCg -3' miRNA: 3'- -CCGGc---UCGCGaaGU--GGUC-GAGCCACG- -5' |
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| 23034 | 3' | -58.1 | NC_005178.1 | + | 37558 | 0.69 | 0.284414 |
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Target: 5'- cGGCCGAGCuGCUcgaugcauucgCGCUGGUccUCGGUGa -3' miRNA: 3'- -CCGGCUCG-CGAa----------GUGGUCG--AGCCACg -5' |
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| 23034 | 3' | -58.1 | NC_005178.1 | + | 33342 | 0.69 | 0.291703 |
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Target: 5'- cGGUCGGcuuGgGCUUCugCGGCUuCGGcGCc -3' miRNA: 3'- -CCGGCU---CgCGAAGugGUCGA-GCCaCG- -5' |
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| 23034 | 3' | -58.1 | NC_005178.1 | + | 4574 | 0.69 | 0.299136 |
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Target: 5'- aGGCCgGAGCGUUgccgcUCgGCCAGCUCGcaccacUGCc -3' miRNA: 3'- -CCGG-CUCGCGA-----AG-UGGUCGAGCc-----ACG- -5' |
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| 23034 | 3' | -58.1 | NC_005178.1 | + | 10713 | 0.69 | 0.299136 |
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Target: 5'- gGGUCG-GCGCggagaCGCCGGC-CGGgGCg -3' miRNA: 3'- -CCGGCuCGCGaa---GUGGUCGaGCCaCG- -5' |
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| 23034 | 3' | -58.1 | NC_005178.1 | + | 15778 | 0.69 | 0.314442 |
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Target: 5'- cGGCCGAgGCGUUgcgCGgCGGCUCGaUGg -3' miRNA: 3'- -CCGGCU-CGCGAa--GUgGUCGAGCcACg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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