Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23034 | 3' | -58.1 | NC_005178.1 | + | 10327 | 0.67 | 0.408972 |
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Target: 5'- gGGCCGGGCGCggaggggcgaagcgCGCCGgGCUgcgcuggccgagcUGGUGg -3' miRNA: 3'- -CCGGCUCGCGaa------------GUGGU-CGA-------------GCCACg -5' |
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| 23034 | 3' | -58.1 | NC_005178.1 | + | 751 | 0.67 | 0.418404 |
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Target: 5'- uGCCGAcCuGCUUCGCCAauGCUCGccgGCu -3' miRNA: 3'- cCGGCUcG-CGAAGUGGU--CGAGCca-CG- -5' |
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| 23034 | 3' | -58.1 | NC_005178.1 | + | 25575 | 0.67 | 0.418404 |
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Target: 5'- cGCCGAGCGCgccCGCgaaCAGCa-GGUuGCa -3' miRNA: 3'- cCGGCUCGCGaa-GUG---GUCGagCCA-CG- -5' |
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| 23034 | 3' | -58.1 | NC_005178.1 | + | 10592 | 0.66 | 0.427968 |
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Target: 5'- cGGCCGAGCGa---GCCGGCacCGcaGCa -3' miRNA: 3'- -CCGGCUCGCgaagUGGUCGa-GCcaCG- -5' |
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| 23034 | 3' | -58.1 | NC_005178.1 | + | 17834 | 0.66 | 0.444518 |
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Target: 5'- aGGCCGAGCGCacccugggagCGCCuGCcgcccUCGGcgagguccaggacgUGCu -3' miRNA: 3'- -CCGGCUCGCGaa--------GUGGuCG-----AGCC--------------ACG- -5' |
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| 23034 | 3' | -58.1 | NC_005178.1 | + | 21236 | 0.66 | 0.447475 |
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Target: 5'- cGGCCGGcCGCaUCAUCGGCgucgaacCGGacgGCg -3' miRNA: 3'- -CCGGCUcGCGaAGUGGUCGa------GCCa--CG- -5' |
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| 23034 | 3' | -58.1 | NC_005178.1 | + | 16891 | 0.66 | 0.457413 |
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Target: 5'- aGGCCGAGCuGCUcggCGCCcuGGC-CGaG-GCa -3' miRNA: 3'- -CCGGCUCG-CGAa--GUGG--UCGaGC-CaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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