miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23034 5' -58.7 NC_005178.1 + 15113 1.08 0.000326
Target:  5'- cUGGAACUGGACCGCCUCAACGCCCCAc -3'
miRNA:   3'- -ACCUUGACCUGGCGGAGUUGCGGGGU- -5'
23034 5' -58.7 NC_005178.1 + 5308 0.76 0.083386
Target:  5'- cUGGAACUGG-CCGaCCUcCAGCGCCUgAa -3'
miRNA:   3'- -ACCUUGACCuGGC-GGA-GUUGCGGGgU- -5'
23034 5' -58.7 NC_005178.1 + 1743 0.75 0.10198
Target:  5'- -cGAACUGGGCCGCCUUgAGCGgaCCCGc -3'
miRNA:   3'- acCUUGACCUGGCGGAG-UUGCg-GGGU- -5'
23034 5' -58.7 NC_005178.1 + 18459 0.75 0.107973
Target:  5'- aGGGGCcgGGAUgGCCUCAGuugaGCCCCGu -3'
miRNA:   3'- aCCUUGa-CCUGgCGGAGUUg---CGGGGU- -5'
23034 5' -58.7 NC_005178.1 + 15703 0.74 0.111092
Target:  5'- cUGG-ACUGGaccaucgaGCCGCCgcgCAACGCCUCGg -3'
miRNA:   3'- -ACCuUGACC--------UGGCGGa--GUUGCGGGGU- -5'
23034 5' -58.7 NC_005178.1 + 4938 0.74 0.114296
Target:  5'- aGGAACUGG-CCGCCagCGGcCGCCCg- -3'
miRNA:   3'- aCCUUGACCuGGCGGa-GUU-GCGGGgu -5'
23034 5' -58.7 NC_005178.1 + 35525 0.71 0.206747
Target:  5'- cGGAACUGG-CCGggcggguacggcuuaCCUUGGCGCCCg- -3'
miRNA:   3'- aCCUUGACCuGGC---------------GGAGUUGCGGGgu -5'
23034 5' -58.7 NC_005178.1 + 9742 0.7 0.221611
Target:  5'- aGGAGCaagGuGACCGCCUCGGCcggcucggcgaaGCCaCCGg -3'
miRNA:   3'- aCCUUGa--C-CUGGCGGAGUUG------------CGG-GGU- -5'
23034 5' -58.7 NC_005178.1 + 20603 0.7 0.227567
Target:  5'- gGcGAGCUGGACgGCCUgaucaaCAGCGCUauCCAg -3'
miRNA:   3'- aC-CUUGACCUGgCGGA------GUUGCGG--GGU- -5'
23034 5' -58.7 NC_005178.1 + 28639 0.7 0.239884
Target:  5'- aGGGAUggcggGGAauGCCggCGACGCCCCc -3'
miRNA:   3'- aCCUUGa----CCUggCGGa-GUUGCGGGGu -5'
23034 5' -58.7 NC_005178.1 + 20603 0.69 0.259398
Target:  5'- cUGGAGCUGGGugacaGCUUCAacggGCGCCCa- -3'
miRNA:   3'- -ACCUUGACCUgg---CGGAGU----UGCGGGgu -5'
23034 5' -58.7 NC_005178.1 + 9008 0.68 0.294771
Target:  5'- aGGggUUGGACUGCUgcauuUCAcAC-CCCCAg -3'
miRNA:   3'- aCCuuGACCUGGCGG-----AGU-UGcGGGGU- -5'
23034 5' -58.7 NC_005178.1 + 25808 0.68 0.294771
Target:  5'- aGGAGCaacgGGACCGCCUgcucggcacgucUGACGCCa-- -3'
miRNA:   3'- aCCUUGa---CCUGGCGGA------------GUUGCGGggu -5'
23034 5' -58.7 NC_005178.1 + 17918 0.68 0.294771
Target:  5'- aGGcgUuugUGGACCGCUcCAcguCGCCCCAg -3'
miRNA:   3'- aCCuuG---ACCUGGCGGaGUu--GCGGGGU- -5'
23034 5' -58.7 NC_005178.1 + 3013 0.68 0.309938
Target:  5'- cUGGAGCgcuuccUGGACCagGCCgagCGugGCGCCCUg -3'
miRNA:   3'- -ACCUUG------ACCUGG--CGGa--GU--UGCGGGGu -5'
23034 5' -58.7 NC_005178.1 + 15170 0.68 0.317741
Target:  5'- aGGuACUGGAcagcCCGCCUUggccgAGCGCUUCAc -3'
miRNA:   3'- aCCuUGACCU----GGCGGAG-----UUGCGGGGU- -5'
23034 5' -58.7 NC_005178.1 + 18060 0.67 0.350423
Target:  5'- cUGGAGCUGGGCaC-CCUgGGCaGCCgCAu -3'
miRNA:   3'- -ACCUUGACCUG-GcGGAgUUG-CGGgGU- -5'
23034 5' -58.7 NC_005178.1 + 30938 0.67 0.358958
Target:  5'- aGGAGCUGGGCaaCGUCgUCAGCaCCCa- -3'
miRNA:   3'- aCCUUGACCUG--GCGG-AGUUGcGGGgu -5'
23034 5' -58.7 NC_005178.1 + 5623 0.67 0.358958
Target:  5'- -uGAAUccgcGGAUCGCCUCGACGUagccgCCCAg -3'
miRNA:   3'- acCUUGa---CCUGGCGGAGUUGCG-----GGGU- -5'
23034 5' -58.7 NC_005178.1 + 4505 0.67 0.367637
Target:  5'- gUGcGAGCUGG-CCGagcggCAACGCUCCGg -3'
miRNA:   3'- -AC-CUUGACCuGGCgga--GUUGCGGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.