miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23035 3' -49.8 NC_005178.1 + 5723 0.66 0.893494
Target:  5'- gGUGGuGUAUCCcugcuGgGAUGGCuuGCCAUCGg -3'
miRNA:   3'- -CAUU-UAUAGG-----UgCUACCGc-CGGUAGC- -5'
23035 3' -49.8 NC_005178.1 + 4495 0.67 0.823298
Target:  5'- gGgcGGUGguggCUugGGUGGUGGCUgcgGUCGg -3'
miRNA:   3'- -CauUUAUa---GGugCUACCGCCGG---UAGC- -5'
23035 3' -49.8 NC_005178.1 + 15037 0.68 0.813374
Target:  5'- ----uUGUCCggcaggcgcuuGCgGAUGGCGGCC-UCGa -3'
miRNA:   3'- cauuuAUAGG-----------UG-CUACCGCCGGuAGC- -5'
23035 3' -49.8 NC_005178.1 + 4730 0.68 0.803232
Target:  5'- gGgcGAUGUUgGCGAUGuCGGCCAUg- -3'
miRNA:   3'- -CauUUAUAGgUGCUACcGCCGGUAgc -5'
23035 3' -49.8 NC_005178.1 + 15503 1.1 0.002075
Target:  5'- cGUAAAUAUCCACGAUGGCGGCCAUCGu -3'
miRNA:   3'- -CAUUUAUAGGUGCUACCGCCGGUAGC- -5'
23035 3' -49.8 NC_005178.1 + 12660 0.7 0.657682
Target:  5'- -gGAAUcgGUCCuCGAagcgcuccaGGCGGCCGUCGa -3'
miRNA:   3'- caUUUA--UAGGuGCUa--------CCGCCGGUAGC- -5'
23035 3' -49.8 NC_005178.1 + 3029 0.7 0.657682
Target:  5'- -----cAUCCGCGcucgGGCGGCCG-CGa -3'
miRNA:   3'- cauuuaUAGGUGCua--CCGCCGGUaGC- -5'
23035 3' -49.8 NC_005178.1 + 20856 0.7 0.657682
Target:  5'- -------aCCGCGAgGGCGGCC-UCGu -3'
miRNA:   3'- cauuuauaGGUGCUaCCGCCGGuAGC- -5'
23035 3' -49.8 NC_005178.1 + 14629 0.7 0.669421
Target:  5'- -----gGUCCAUGcgGuGCGGCCAUUc -3'
miRNA:   3'- cauuuaUAGGUGCuaC-CGCCGGUAGc -5'
23035 3' -49.8 NC_005178.1 + 5334 0.69 0.738539
Target:  5'- -------cCCugaACGGUGGCGGCC-UCGg -3'
miRNA:   3'- cauuuauaGG---UGCUACCGCCGGuAGC- -5'
23035 3' -49.8 NC_005178.1 + 24107 0.69 0.760744
Target:  5'- --uGAUGUUgACGGUGGCGGUCuugcCGa -3'
miRNA:   3'- cauUUAUAGgUGCUACCGCCGGua--GC- -5'
23035 3' -49.8 NC_005178.1 + 3459 0.68 0.771627
Target:  5'- -cGGAUGUCgAUGAUGGUGGUgAUUu -3'
miRNA:   3'- caUUUAUAGgUGCUACCGCCGgUAGc -5'
23035 3' -49.8 NC_005178.1 + 11738 0.68 0.803232
Target:  5'- ------uUCgACGGUGcGCaGGCCGUCGa -3'
miRNA:   3'- cauuuauAGgUGCUAC-CG-CCGGUAGC- -5'
23035 3' -49.8 NC_005178.1 + 31069 0.66 0.900982
Target:  5'- ------uUCCcgcuCGAUGGCGGUCAgCGu -3'
miRNA:   3'- cauuuauAGGu---GCUACCGCCGGUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.