miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23035 5' -63 NC_005178.1 + 15466 1.07 0.000145
Target:  5'- uACCAGUCGCCGCCCAUGCGGCCACCUa -3'
miRNA:   3'- -UGGUCAGCGGCGGGUACGCCGGUGGA- -5'
23035 5' -63 NC_005178.1 + 1534 0.67 0.20543
Target:  5'- gACCAGuUCGCUGaCCUggGCGGCguaguugcacuCACCa -3'
miRNA:   3'- -UGGUC-AGCGGC-GGGuaCGCCG-----------GUGGa -5'
23035 5' -63 NC_005178.1 + 5802 0.67 0.1949
Target:  5'- uGCCcGagGCCGCCaccgAUGCGGCgAUCUg -3'
miRNA:   3'- -UGGuCagCGGCGGg---UACGCCGgUGGA- -5'
23035 5' -63 NC_005178.1 + 29046 0.68 0.174785
Target:  5'- uAUCGGU-GCCGCCCAgGCcaggggcgcgcagGGUCACCUg -3'
miRNA:   3'- -UGGUCAgCGGCGGGUaCG-------------CCGGUGGA- -5'
23035 5' -63 NC_005178.1 + 31425 0.68 0.161694
Target:  5'- uCCAGUagcUGCCGCUC--GCGGuCCACCg -3'
miRNA:   3'- uGGUCA---GCGGCGGGuaCGCC-GGUGGa -5'
23035 5' -63 NC_005178.1 + 37148 0.69 0.144693
Target:  5'- cGCCAgGUCGCCGaCCgggacgccagcgaGUGCuGCCGCCUc -3'
miRNA:   3'- -UGGU-CAGCGGCgGG-------------UACGcCGGUGGA- -5'
23035 5' -63 NC_005178.1 + 17729 0.66 0.259043
Target:  5'- cGCUuGUCuaCGCCCGUcucGaCGGUCACCUg -3'
miRNA:   3'- -UGGuCAGcgGCGGGUA---C-GCCGGUGGA- -5'
23035 5' -63 NC_005178.1 + 17665 0.66 0.259043
Target:  5'- gACCAcggCGaCGCCa--GCGGCCGCCg -3'
miRNA:   3'- -UGGUca-GCgGCGGguaCGCCGGUGGa -5'
23035 5' -63 NC_005178.1 + 24499 0.67 0.216447
Target:  5'- gACCGGcgCGCCGCCUu--CGGCCAg-- -3'
miRNA:   3'- -UGGUCa-GCGGCGGGuacGCCGGUgga -5'
23035 5' -63 NC_005178.1 + 21314 0.67 0.196968
Target:  5'- cCCAcaCGCCGUCCGguucgacgccgaugaUGCGGCCgGCCg -3'
miRNA:   3'- uGGUcaGCGGCGGGU---------------ACGCCGG-UGGa -5'
23035 5' -63 NC_005178.1 + 5356 0.68 0.161694
Target:  5'- gGCCAGUuccagcucgCGCCgGCCCugaacgGUGGCgGCCUc -3'
miRNA:   3'- -UGGUCA---------GCGG-CGGGua----CGCCGgUGGA- -5'
23035 5' -63 NC_005178.1 + 26253 0.79 0.025629
Target:  5'- aGCCAG-CGCCacGCCCGcaGCGGCCACCg -3'
miRNA:   3'- -UGGUCaGCGG--CGGGUa-CGCCGGUGGa -5'
23035 5' -63 NC_005178.1 + 4147 0.66 0.222144
Target:  5'- ---uGUCGuaGCCCA--CGGCCACCUg -3'
miRNA:   3'- ugguCAGCggCGGGUacGCCGGUGGA- -5'
23035 5' -63 NC_005178.1 + 28798 0.76 0.039594
Target:  5'- aGCCagacgauguaauGGUCGCCGCCCuugccggcccacAUGuCGGCCGCCa -3'
miRNA:   3'- -UGG------------UCAGCGGCGGG------------UAC-GCCGGUGGa -5'
23035 5' -63 NC_005178.1 + 2821 0.67 0.1949
Target:  5'- gGCCAGcugCGucuccuggcggaCCGCCUugGUGGCCACCUc -3'
miRNA:   3'- -UGGUCa--GC------------GGCGGGuaCGCCGGUGGA- -5'
23035 5' -63 NC_005178.1 + 14291 0.66 0.227967
Target:  5'- uGCCAGaCGCgGCCCuUGCcGGCgC-CCUg -3'
miRNA:   3'- -UGGUCaGCGgCGGGuACG-CCG-GuGGA- -5'
23035 5' -63 NC_005178.1 + 28274 0.7 0.123087
Target:  5'- -gCGG-CGCCGCUCAggaGCGuGCCGCCa -3'
miRNA:   3'- ugGUCaGCGGCGGGUa--CGC-CGGUGGa -5'
23035 5' -63 NC_005178.1 + 35924 0.67 0.216447
Target:  5'- gGCCAGUauucgGCCccaucgucagGCUCAUGCGGaaaCGCCUc -3'
miRNA:   3'- -UGGUCAg----CGG----------CGGGUACGCCg--GUGGA- -5'
23035 5' -63 NC_005178.1 + 30234 0.67 0.1949
Target:  5'- aACUGGUCGUCGCaCCcauuUGaUGGCUACCa -3'
miRNA:   3'- -UGGUCAGCGGCG-GGu---AC-GCCGGUGGa -5'
23035 5' -63 NC_005178.1 + 1525 0.67 0.194387
Target:  5'- gACCguuacgaGGUCGCCGCCCGcaUGuCGcGCCuguCCg -3'
miRNA:   3'- -UGG-------UCAGCGGCGGGU--AC-GC-CGGu--GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.