Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23036 | 3' | -59.7 | NC_005178.1 | + | 16662 | 0.96 | 0.001891 |
Target: 5'- cCGGCACCU-GACGCCCAGCUUGACCAg -3' miRNA: 3'- -GCCGUGGAcCUGCGGGUCGAACUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 33977 | 0.67 | 0.297479 |
Target: 5'- cCGGCACCaGGcCGCCgAGCaucGCCGc -3' miRNA: 3'- -GCCGUGGaCCuGCGGgUCGaacUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 5210 | 0.67 | 0.305006 |
Target: 5'- cCGGCGCCagguugcGGGCGUCCuccagagacacuGGCUgGGCCGg -3' miRNA: 3'- -GCCGUGGa------CCUGCGGG------------UCGAaCUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 35044 | 0.66 | 0.353213 |
Target: 5'- uCGGCGCCU---CGgCCAGCgcGGCCAa -3' miRNA: 3'- -GCCGUGGAccuGCgGGUCGaaCUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 20454 | 0.72 | 0.13354 |
Target: 5'- uGGuCGCCUGGGCGUCCAG---GGCCGg -3' miRNA: 3'- gCC-GUGGACCUGCGGGUCgaaCUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 20490 | 0.72 | 0.13732 |
Target: 5'- gGGCcagGCCgagGGuuuCGCgCAGCUUGGCCAg -3' miRNA: 3'- gCCG---UGGa--CCu--GCGgGUCGAACUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 25780 | 0.7 | 0.212508 |
Target: 5'- gGcGCGCCUGGAgGCugucgagcuucuCCAGCUcgcgagUGACCGg -3' miRNA: 3'- gC-CGUGGACCUgCG------------GGUCGA------ACUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 3801 | 0.7 | 0.212508 |
Target: 5'- cCGGCGCgUcagcuugaaGGugG-CCAGCUUGGCCu -3' miRNA: 3'- -GCCGUGgA---------CCugCgGGUCGAACUGGu -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 11203 | 0.69 | 0.248814 |
Target: 5'- gCGGCgGCCaGGGCGCCCGcGCUgaugUGgauGCCAa -3' miRNA: 3'- -GCCG-UGGaCCUGCGGGU-CGA----AC---UGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 18400 | 0.67 | 0.29525 |
Target: 5'- aGGCGcuCCUGGACcucgcgguccaccaGCuCCAGCUcgaugcgauUGGCCAu -3' miRNA: 3'- gCCGU--GGACCUG--------------CG-GGUCGA---------ACUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 29016 | 0.68 | 0.290098 |
Target: 5'- gGGuCACCUGG-CGCaCGGCgaUGGCCGu -3' miRNA: 3'- gCC-GUGGACCuGCGgGUCGa-ACUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 15662 | 0.69 | 0.230057 |
Target: 5'- uCGGCcuaGCCUGGAggUGCCCcuGCUcGGCCu -3' miRNA: 3'- -GCCG---UGGACCU--GCGGGu-CGAaCUGGu -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 24841 | 0.77 | 0.063516 |
Target: 5'- gCGGCACCUGGAggaaCGCCuCGGCaaUGGCCu -3' miRNA: 3'- -GCCGUGGACCU----GCGG-GUCGa-ACUGGu -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 18713 | 0.68 | 0.290098 |
Target: 5'- cCGGgauaguCACCUuacGGccuCGCCCAGCcUGACCGc -3' miRNA: 3'- -GCC------GUGGA---CCu--GCGGGUCGaACUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 15174 | 0.73 | 0.122767 |
Target: 5'- gGGCAgguaCUGGACaGCCCGcCUUGGCCGa -3' miRNA: 3'- gCCGUg---GACCUG-CGGGUcGAACUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 20818 | 0.69 | 0.230057 |
Target: 5'- aGGCACCgaGGuACGCCCGGCgcucuGCUg -3' miRNA: 3'- gCCGUGGa-CC-UGCGGGUCGaac--UGGu -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 35418 | 0.68 | 0.290098 |
Target: 5'- cCGG-GCCUGGAgcgucaCGCCCuGGCUguaGACCGu -3' miRNA: 3'- -GCCgUGGACCU------GCGGG-UCGAa--CUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 24292 | 0.67 | 0.297479 |
Target: 5'- gGGCGCC-GGGCuGCUCGcGCUgucggugaUGACCAg -3' miRNA: 3'- gCCGUGGaCCUG-CGGGU-CGA--------ACUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 3095 | 0.73 | 0.122767 |
Target: 5'- uCGGCACCaGGGCGCCaC-GCUcGGCCu -3' miRNA: 3'- -GCCGUGGaCCUGCGG-GuCGAaCUGGu -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 10049 | 0.71 | 0.18085 |
Target: 5'- gCGGCACUuuUGGcguCGCCCGGcCUUG-CCGg -3' miRNA: 3'- -GCCGUGG--ACCu--GCGGGUC-GAACuGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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