miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23036 3' -59.7 NC_005178.1 + 16662 0.96 0.001891
Target:  5'- cCGGCACCU-GACGCCCAGCUUGACCAg -3'
miRNA:   3'- -GCCGUGGAcCUGCGGGUCGAACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 33977 0.67 0.297479
Target:  5'- cCGGCACCaGGcCGCCgAGCaucGCCGc -3'
miRNA:   3'- -GCCGUGGaCCuGCGGgUCGaacUGGU- -5'
23036 3' -59.7 NC_005178.1 + 5210 0.67 0.305006
Target:  5'- cCGGCGCCagguugcGGGCGUCCuccagagacacuGGCUgGGCCGg -3'
miRNA:   3'- -GCCGUGGa------CCUGCGGG------------UCGAaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 35044 0.66 0.353213
Target:  5'- uCGGCGCCU---CGgCCAGCgcGGCCAa -3'
miRNA:   3'- -GCCGUGGAccuGCgGGUCGaaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 20454 0.72 0.13354
Target:  5'- uGGuCGCCUGGGCGUCCAG---GGCCGg -3'
miRNA:   3'- gCC-GUGGACCUGCGGGUCgaaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 20490 0.72 0.13732
Target:  5'- gGGCcagGCCgagGGuuuCGCgCAGCUUGGCCAg -3'
miRNA:   3'- gCCG---UGGa--CCu--GCGgGUCGAACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 25780 0.7 0.212508
Target:  5'- gGcGCGCCUGGAgGCugucgagcuucuCCAGCUcgcgagUGACCGg -3'
miRNA:   3'- gC-CGUGGACCUgCG------------GGUCGA------ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 3801 0.7 0.212508
Target:  5'- cCGGCGCgUcagcuugaaGGugG-CCAGCUUGGCCu -3'
miRNA:   3'- -GCCGUGgA---------CCugCgGGUCGAACUGGu -5'
23036 3' -59.7 NC_005178.1 + 11203 0.69 0.248814
Target:  5'- gCGGCgGCCaGGGCGCCCGcGCUgaugUGgauGCCAa -3'
miRNA:   3'- -GCCG-UGGaCCUGCGGGU-CGA----AC---UGGU- -5'
23036 3' -59.7 NC_005178.1 + 18400 0.67 0.29525
Target:  5'- aGGCGcuCCUGGACcucgcgguccaccaGCuCCAGCUcgaugcgauUGGCCAu -3'
miRNA:   3'- gCCGU--GGACCUG--------------CG-GGUCGA---------ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 29016 0.68 0.290098
Target:  5'- gGGuCACCUGG-CGCaCGGCgaUGGCCGu -3'
miRNA:   3'- gCC-GUGGACCuGCGgGUCGa-ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 15662 0.69 0.230057
Target:  5'- uCGGCcuaGCCUGGAggUGCCCcuGCUcGGCCu -3'
miRNA:   3'- -GCCG---UGGACCU--GCGGGu-CGAaCUGGu -5'
23036 3' -59.7 NC_005178.1 + 24841 0.77 0.063516
Target:  5'- gCGGCACCUGGAggaaCGCCuCGGCaaUGGCCu -3'
miRNA:   3'- -GCCGUGGACCU----GCGG-GUCGa-ACUGGu -5'
23036 3' -59.7 NC_005178.1 + 18713 0.68 0.290098
Target:  5'- cCGGgauaguCACCUuacGGccuCGCCCAGCcUGACCGc -3'
miRNA:   3'- -GCC------GUGGA---CCu--GCGGGUCGaACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 15174 0.73 0.122767
Target:  5'- gGGCAgguaCUGGACaGCCCGcCUUGGCCGa -3'
miRNA:   3'- gCCGUg---GACCUG-CGGGUcGAACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 20818 0.69 0.230057
Target:  5'- aGGCACCgaGGuACGCCCGGCgcucuGCUg -3'
miRNA:   3'- gCCGUGGa-CC-UGCGGGUCGaac--UGGu -5'
23036 3' -59.7 NC_005178.1 + 35418 0.68 0.290098
Target:  5'- cCGG-GCCUGGAgcgucaCGCCCuGGCUguaGACCGu -3'
miRNA:   3'- -GCCgUGGACCU------GCGGG-UCGAa--CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 24292 0.67 0.297479
Target:  5'- gGGCGCC-GGGCuGCUCGcGCUgucggugaUGACCAg -3'
miRNA:   3'- gCCGUGGaCCUG-CGGGU-CGA--------ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 3095 0.73 0.122767
Target:  5'- uCGGCACCaGGGCGCCaC-GCUcGGCCu -3'
miRNA:   3'- -GCCGUGGaCCUGCGG-GuCGAaCUGGu -5'
23036 3' -59.7 NC_005178.1 + 10049 0.71 0.18085
Target:  5'- gCGGCACUuuUGGcguCGCCCGGcCUUG-CCGg -3'
miRNA:   3'- -GCCGUGG--ACCu--GCGGGUC-GAACuGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.