miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23036 5' -56.9 NC_005178.1 + 2897 0.69 0.312739
Target:  5'- -cUGAUGcUGgaCAUGGCgcgccucGGCCAGGUCg -3'
miRNA:   3'- uuACUGCaACg-GUACCG-------CCGGUCCAG- -5'
23036 5' -56.9 NC_005178.1 + 5009 0.68 0.350314
Target:  5'- cGAUGaucaGCGggcgGCCGcUGGCGGCCAguuccucggcgaucuGGUCg -3'
miRNA:   3'- -UUAC----UGCaa--CGGU-ACCGCCGGU---------------CCAG- -5'
23036 5' -56.9 NC_005178.1 + 5705 0.69 0.321634
Target:  5'- gGAUGGC-UUGCCAUcGGCGuuCAGGUUc -3'
miRNA:   3'- -UUACUGcAACGGUA-CCGCcgGUCCAG- -5'
23036 5' -56.9 NC_005178.1 + 5893 0.66 0.450808
Target:  5'- -uUGAgGgcGUaAUGGCGGCCguugcGGGUCa -3'
miRNA:   3'- uuACUgCaaCGgUACCGCCGG-----UCCAG- -5'
23036 5' -56.9 NC_005178.1 + 9591 0.66 0.450808
Target:  5'- -uUGGCGUUcccgcGCCA-GGCGGCgCuggcGGUCu -3'
miRNA:   3'- uuACUGCAA-----CGGUaCCGCCG-Gu---CCAG- -5'
23036 5' -56.9 NC_005178.1 + 10235 0.69 0.321634
Target:  5'- --aGACcugGCCAUGGCGGCuCcuGUCg -3'
miRNA:   3'- uuaCUGcaaCGGUACCGCCG-GucCAG- -5'
23036 5' -56.9 NC_005178.1 + 11883 0.7 0.268219
Target:  5'- gAAUGAuCGcgGUCAccagGGCGGCCAGGg- -3'
miRNA:   3'- -UUACU-GCaaCGGUa---CCGCCGGUCCag -5'
23036 5' -56.9 NC_005178.1 + 12921 0.66 0.429639
Target:  5'- --gGugGUggGCUggaggacGUGGCGcGCCAGGUg -3'
miRNA:   3'- uuaCugCAa-CGG-------UACCGC-CGGUCCAg -5'
23036 5' -56.9 NC_005178.1 + 15772 0.68 0.373444
Target:  5'- --aGGCGUUGCgc-GGCGGCUcgauGGUCc -3'
miRNA:   3'- uuaCUGCAACGguaCCGCCGGu---CCAG- -5'
23036 5' -56.9 NC_005178.1 + 16629 1.07 0.000407
Target:  5'- uAAUGACGUUGCCAUGGCGGCCAGGUCg -3'
miRNA:   3'- -UUACUGCAACGGUACCGCCGGUCCAG- -5'
23036 5' -56.9 NC_005178.1 + 19826 0.66 0.427654
Target:  5'- --aGGCGguucuucuucaugccGCCAUGGUGGCgAcGGUCg -3'
miRNA:   3'- uuaCUGCaa-------------CGGUACCGCCGgU-CCAG- -5'
23036 5' -56.9 NC_005178.1 + 20445 0.68 0.373444
Target:  5'- --gGGCGUccaggGCCGgcuucagGGCGGUCAGGg- -3'
miRNA:   3'- uuaCUGCAa----CGGUa------CCGCCGGUCCag -5'
23036 5' -56.9 NC_005178.1 + 21260 0.67 0.391929
Target:  5'- cGGUGcCGU--CCGUGGCGGCgAcGGUCu -3'
miRNA:   3'- -UUACuGCAacGGUACCGCCGgU-CCAG- -5'
23036 5' -56.9 NC_005178.1 + 24110 0.66 0.461089
Target:  5'- gGGUGAUGUUGaCgGUGGCGGUCuugccgauAGGg- -3'
miRNA:   3'- -UUACUGCAAC-GgUACCGCCGG--------UCCag -5'
23036 5' -56.9 NC_005178.1 + 25173 0.66 0.482011
Target:  5'- uGAUGGCGgucaaCCAUGGCuucGCCGGGg- -3'
miRNA:   3'- -UUACUGCaac--GGUACCGc--CGGUCCag -5'
23036 5' -56.9 NC_005178.1 + 25346 0.66 0.430634
Target:  5'- -cUGGCGaccaUGCCAgccaGGCuGGCCGGGa- -3'
miRNA:   3'- uuACUGCa---ACGGUa---CCG-CCGGUCCag -5'
23036 5' -56.9 NC_005178.1 + 25838 0.71 0.227717
Target:  5'- -cUGACGccaugGCCGUGGcCGGCauuucggCAGGUCa -3'
miRNA:   3'- uuACUGCaa---CGGUACC-GCCG-------GUCCAG- -5'
23036 5' -56.9 NC_005178.1 + 26367 0.7 0.254333
Target:  5'- gAGUGACGccGCCAUGGCGGaCAGu-- -3'
miRNA:   3'- -UUACUGCaaCGGUACCGCCgGUCcag -5'
23036 5' -56.9 NC_005178.1 + 26703 0.71 0.228337
Target:  5'- --aGAcCGUUGCCggGGUGGCCAaGGg- -3'
miRNA:   3'- uuaCU-GCAACGGuaCCGCCGGU-CCag -5'
23036 5' -56.9 NC_005178.1 + 27938 0.75 0.122724
Target:  5'- -uUGACccaGUUGCCcugGGCGGCCuggAGGUCg -3'
miRNA:   3'- uuACUG---CAACGGua-CCGCCGG---UCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.