miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23037 5' -56.5 NC_005178.1 + 7316 0.73 0.187545
Target:  5'- -cAGCGcaugggGGUCCGccuucAUCGCCUGGaGCCGa -3'
miRNA:   3'- caUCGCa-----CCAGGU-----UAGUGGACC-CGGU- -5'
23037 5' -56.5 NC_005178.1 + 12127 0.68 0.370685
Target:  5'- -aGGCGcUGGUCgCAaccAUCACCaggaacaGGGCCAg -3'
miRNA:   3'- caUCGC-ACCAG-GU---UAGUGGa------CCCGGU- -5'
23037 5' -56.5 NC_005178.1 + 12671 0.67 0.467644
Target:  5'- cUGGCGggUGGcCUggUUGCCUGcGGCCu -3'
miRNA:   3'- cAUCGC--ACCaGGuuAGUGGAC-CCGGu -5'
23037 5' -56.5 NC_005178.1 + 16610 0.68 0.388959
Target:  5'- -gGGCGUccaGGUgCCGGUCAaCUGGGuCCAg -3'
miRNA:   3'- caUCGCA---CCA-GGUUAGUgGACCC-GGU- -5'
23037 5' -56.5 NC_005178.1 + 16812 1.08 0.000448
Target:  5'- gGUAGCGUGGUCCAAUCACCUGGGCCAg -3'
miRNA:   3'- -CAUCGCACCAGGUUAGUGGACCCGGU- -5'
23037 5' -56.5 NC_005178.1 + 16974 0.67 0.457353
Target:  5'- ---uCGUGG-CCGA-CACCUgGGGCCGg -3'
miRNA:   3'- caucGCACCaGGUUaGUGGA-CCCGGU- -5'
23037 5' -56.5 NC_005178.1 + 18344 0.67 0.447184
Target:  5'- --cGCGaGGUCCAGgagCGCCUGGcGgCAc -3'
miRNA:   3'- cauCGCaCCAGGUUa--GUGGACC-CgGU- -5'
23037 5' -56.5 NC_005178.1 + 20468 0.68 0.388959
Target:  5'- -cAGCuUGG-CCAgguugGUCGCCUGGGCg- -3'
miRNA:   3'- caUCGcACCaGGU-----UAGUGGACCCGgu -5'
23037 5' -56.5 NC_005178.1 + 24297 0.72 0.221135
Target:  5'- -cGGCGaGGUCCAA-CugCUGGGUCu -3'
miRNA:   3'- caUCGCaCCAGGUUaGugGACCCGGu -5'
23037 5' -56.5 NC_005178.1 + 26713 0.67 0.437141
Target:  5'- -cGGgGUGG-CCAAgggCGCCUGGGaCGa -3'
miRNA:   3'- caUCgCACCaGGUUa--GUGGACCCgGU- -5'
23037 5' -56.5 NC_005178.1 + 27530 0.67 0.447184
Target:  5'- -cGGCGaucuucUGGUCCAGgcugaUGCgCUGGGCCGc -3'
miRNA:   3'- caUCGC------ACCAGGUUa----GUG-GACCCGGU- -5'
23037 5' -56.5 NC_005178.1 + 30794 0.66 0.488577
Target:  5'- cUGGCaGcGGUCgCGGccUCgACCUGGGCCGg -3'
miRNA:   3'- cAUCG-CaCCAG-GUU--AG-UGGACCCGGU- -5'
23037 5' -56.5 NC_005178.1 + 35469 0.68 0.379748
Target:  5'- gGUGGCGg---CCAG-CGCCgGGGCCAg -3'
miRNA:   3'- -CAUCGCaccaGGUUaGUGGaCCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.